Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2009 ATGTTTGATTACAGGGTGCTTAAACGTGCCAAGATATATATTTTCTCTCTAATCACATTCTCAGCCATAATTTTTCTCATCCACTGTGATGGCATTATCTACCATGATTCCCAACACCCTTTTGCAAATAAAGGAGCACTAGAAGTGTTGCAAGCTCAAAGTCACATAAATGGAGAAGGGTTAAGGTCAACACATGCTCTTACCCGCATACCTTTACGTTCCATGCAAGAAGAGAAGGAGGGAGTTGATCAAGGAAATGATCATCGAGTACTAGTTGCTCCATTCAATGTTACTGAAGAAAAAAGAATTGCTTGGTTTAGAGGGAATCTTCATGAGTTCAAGATTCTCAAGTCAGATAAATTGAGTAGGCAATTCCATGCTCGGGTTATGGGATTTTTCAGCCAAGAATGTGAGTCTCAATTTTTCATGACTTGGTTTTCCCCTGCAAGCTCATTTGGATCAAGAGAATTGTTGTCTTTAGAGAGTCTTTTCAAGGTGCATCCTAATGCATGCTTGGTGATTCTATCAAGGACTTTGGACTCTATTCATGGCTTAAGGATCCTGAAGCCATTTCTTGATGGGGGGTTTAGGGTTCAGGGACTGACCCCAGATTTGCCATTTTTGCTCAAGGGGACTCAAGCTGAAGCATGGTTTCATGAGTTAAGGAAAGGGAAAAGGGACCCTGGTGAGATTTCTTTGTTCCAGAACCTGTCTAACTTGGTAAGACTTGCAGTTTTGTACAAGTATGGTGGTGTTTACTTAGACACAGATTTTATAGTATTGAAACCTTTAACTGGGTTGAGGAATTCTATTGGAGCACAAAGCATGGATGTGGGTAATAAGCACTGGACTAGATTGAATAATGCAGTTTTGATATTTGATATGAATCATCCACTTCTTCTCAGATTCATCAATGAATTTGCGTTGACTTTTGATGGGAACAAATGGGGGCATAATGGTCCTTACATGGTTTCTAGAGTGGTTGAGAGACTAGGGAAGAGGCCAGGTTTCAACTTTTCAATCTTGCCTCCTATGGCCTTTTATCCTACAGATTGGATTAGGATTGTTGGTTTCTTTAAGAAGCCCAAAACTCAAGGTGAATCAAAATGGGTTGAAGCCAAACTACTTCAGCTTAGTAGTGGTGAGACTCATGGGGTTCATCTATGGAACAGAGAGAGTGGAAGATTGAAGATTGAAGAAGGAAGTGTAATAGCAAGACTTGTATCTGATCATTGTGTCTTTTGCAAATCTCTGTAG 1257 0.401 MFDYRVLKRAKIYIFSLITFSAIIFLIHCDGIIYHDSQHPFANKGALEVLQAQSHINGEGLRSTHALTRIPLRSMQEEKEGVDQGNDHRVLVAPFNVTEEKRIAWFRGNLHEFKILKSDKLSRQFHARVMGFFSQECESQFFMTWFSPASSFGSRELLSLESLFKVHPNACLVILSRTLDSIHGLRILKPFLDGGFRVQGLTPDLPFLLKGTQAEAWFHELRKGKRDPGEISLFQNLSNLVRLAVLYKYGGVYLDTDFIVLKPLTGLRNSIGAQSMDVGNKHWTRLNNAVLIFDMNHPLLLRFINEFALTFDGNKWGHNGPYMVSRVVERLGKRPGFNFSILPPMAFYPTDWIRIVGFFKKPKTQGESKWVEAKLLQLSSGETHGVHLWNRESGRLKIEEGSVIARLVSDHCVFCKSL* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2009 418 Pfam Alpha 1,4-glycosyltransferase conserved region 293 417 IPR007652 -
Apr4g2009 418 PANTHER ALPHA 1,4-GLYCOSYLTRANSFERASE FAMILY PROTEIN 1 417 IPR044789 -
Apr4g2009 418 Gene3D - 173 338 - -
Apr4g2009 418 PANTHER ALPHA 1,4-GLYCOSYLTRANSFERASE FAMILY PROTEIN 1 417 - -
Apr4g2009 418 SUPERFAMILY Nucleotide-diphospho-sugar transferases 105 415 IPR029044 -
Apr4g2009 418 Pfam Glycosyltransferase sugar-binding region containing DXD motif 155 275 IPR007577 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2009 Apr-Chr4 28756144 28757400 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2009 7 418 Glycosyltransferase AT2G38150 47.596 5.98e-137 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2009 K01988 - gmx:100812965 612.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2009 4 28756144 28757400 Apr4g2009 4 28756144 28757400 ECH
Apr4g2009 4 28756144 28757400 Apr10g0719 10 18078482 18081807 PCT