Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1268 ATGGATCAAATTAGTAATGAGGCTAGTGTCGACCGGTTTCCAATTGGCCCTTCAGACATTCTTGGTAGGACAATTGCTTTCAGGGTTCTTTTGTGCAAGTCTATGTCACATTTGAGGCACCATATATTTTCTCTGTTGTTAGATCTCTTCTTTAGGTTTAGGGGGTTTTTGGCATCGTTTATATCATGGTTGCATCCAAGGAATCCGCAGGGAATATTGGCAATGATGACAATAGTTGCTTTCTTGTTGAAACGATACACAAATGTGAAGGTAAGGGCTGAGATGGCATACAGGAGGAAATTTTGGAGAAACATGATGAGAACTGCTTTGACCTATGAGGAGTGGGCTCATGCAGCTAAGATGCTTGATAAAGAGACACCAAAGATGAATGAATCAGACCTTTATGATGTAGAATTGGTGAGGAACAAACTTCAAGAGCTTCGCCATCGTAGGCAAGAGGGATCTCTTAGAGATATAATATTTTGTATGCGTGCGGATCTTGTTAGAAATTTAGGTAATATGTGTAACCCTGAACTACACAAGGGTAGGCTTCAGGTGCCGAAATTGATCAAGGAGTACATTGATGAGGTAACAACTCAATTGAGAATGGTCTGTGACTCGGATTCTGAGGAGCTGTCATTGGAAGAAAAGCTTGCTTTCATGCATGAAACTAGACATGCATTTGGGAGGACAGCTTTACTTTTAAGTGGGGGTGCTTCTCTTGGAGCTTCTCATGTCGGTGTAGTTAAAACACTGGTAGAGCATAAACTCTTACCTAGGATAATTGCTGGTTCAAGTGTAGGATCCATTATGTGTGCCGTTGTTGCCACTAGGACCTGGCCTGAGCTTCAGAGCTTTTTTGAGAATTCATGGCACTCATTACAATTTTTTGATCAAATGGGTGGGATTTTCACTGTTGTTAAGAGGGTCACAACATGTGGTGCTGTTCATGAGATCAGACAGTTGCAAATGATGTTGAGGCATCTAACAAGCAATCTTACATTTCAAGAAGCTTATGACATGACGGGTAGAATTCTTGGGATCACAGTTTGCTCCCCGAGGAAGCATGAACCACCTAGATGTCTTAACTACTTGACTTCACCCCATGTGGTTATATGGAGTGCAGTCACTGCTTCTTGTGCCTTTCCTGGCCTTTTCGAAGCTCAGGAATTGATGGCAAAGGATAGAAGTGGAGAGATTGTTCCTTACCATCCTCCTTTTAATTTGGGTCCTGAAGAGGGCTCCACACCAGCGCGCCGTTGGAGAGATGGTAGCTTGGAGATTGATTTACCAATGATGCAATTGAAAGAACTTTTCAATGTCAACCATTTTATAGTTAGTCAGGCCAATCCTCACATTGCACCATTATTGAGATTGAAAGAATTTGTACGGACATATGGAGGCAATTTTGCTGCCAAGCTTGCTCATCTTGTGGAGATGGAGGTGAAACATAGATGTAATCAAGTACTGGAACTTGGCTTTCCATTAGGTGGACTTGCCAAGTTGTTTGCTCAAGACTGGGAAGGTGACGTGACTGTTGTTATGCCTGCCACCCTTGCTCAGTACTGCAAAATTATACAGAATCCTTCGTATGGAGAGCTTCAAAAGGCAGCCAACCAAGGGAGAAGATGCACTTGGGAGAAGCTTTCAGCCATAAAAGCAAATTGCGGCATTGAGCTTGCTCTTGATGAATGTGTTTTAATTCTCAATCACATGAGAAGGCTGAAAAGAATTGCTGAGAGAGCTGCTTCTGCTTCTCATGGTCTGTCCAGTACTGTCAAATTCAGCGCCTCAAAAAGAATTCCTTCATGGAATTGCATTGCGCGAGAGAATTCGACAGGCTCTCTTGAAGACCTTTTAGATGTTACTTCCTCATTGCATCAAAACATTAGTAGTTCCAATGGAGCCAATGGTAAAGCTTGGAAGACCCACCGTGGCATACATGATGGAAGTGACAGTGACTCTGAAAGTGTTGATTTGAATTCATGGACCCGATCTGGCGGGCCTTTGATGAGGACTACTTCAGCAAATATGTTCATTGACTTTCTTCAAAGCTTGGATACTGATACTGAAGCAAATAGAAGCTTAGTGGGTCATGCTATTGCTAATCCTCATGATCTTCAGTACCACATTGCCAGGGTCACAACACCAGATAGAAACTCTGACAGCACAGAATCTGAGCAAAGGGAAATTGGCAACAGGGTTGTCAATGGATCCAGCATACTGGTAAATGAAGGTGATCTCTTGCAGCCTGAAAGGATCCATAATGGGATTGTGCTTAATGTTGTCAAGAAAGAAGATTTGACACCTTCAAGTAGGAGTCATGATTTTGATAATTACAACAATGAAGTTGCTGAATGTGTCCAAGATGAGTGTCCTGGGAAGGAGATGGATGCTGCTAGCTCAGGTTCTGAATATGGAGATGATGAATCCGCACCAATTATGTCATTAACTGATGCACCCGATTACAGTTTCATGGATCATAGCATTGTTGGCAGTTAG 2502 0.4253 MDQISNEASVDRFPIGPSDILGRTIAFRVLLCKSMSHLRHHIFSLLLDLFFRFRGFLASFISWLHPRNPQGILAMMTIVAFLLKRYTNVKVRAEMAYRRKFWRNMMRTALTYEEWAHAAKMLDKETPKMNESDLYDVELVRNKLQELRHRRQEGSLRDIIFCMRADLVRNLGNMCNPELHKGRLQVPKLIKEYIDEVTTQLRMVCDSDSEELSLEEKLAFMHETRHAFGRTALLLSGGASLGASHVGVVKTLVEHKLLPRIIAGSSVGSIMCAVVATRTWPELQSFFENSWHSLQFFDQMGGIFTVVKRVTTCGAVHEIRQLQMMLRHLTSNLTFQEAYDMTGRILGITVCSPRKHEPPRCLNYLTSPHVVIWSAVTASCAFPGLFEAQELMAKDRSGEIVPYHPPFNLGPEEGSTPARRWRDGSLEIDLPMMQLKELFNVNHFIVSQANPHIAPLLRLKEFVRTYGGNFAAKLAHLVEMEVKHRCNQVLELGFPLGGLAKLFAQDWEGDVTVVMPATLAQYCKIIQNPSYGELQKAANQGRRCTWEKLSAIKANCGIELALDECVLILNHMRRLKRIAERAASASHGLSSTVKFSASKRIPSWNCIARENSTGSLEDLLDVTSSLHQNISSSNGANGKAWKTHRGIHDGSDSDSESVDLNSWTRSGGPLMRTTSANMFIDFLQSLDTDTEANRSLVGHAIANPHDLQYHIARVTTPDRNSDSTESEQREIGNRVVNGSSILVNEGDLLQPERIHNGIVLNVVKKEDLTPSSRSHDFDNYNNEVAECVQDECPGKEMDAASSGSEYGDDESAPIMSLTDAPDYSFMDHSIVGS* 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1268 833 Pfam Patatin-like phospholipase 233 424 IPR002641 GO:0006629
Apr4g1268 833 PANTHER NEUROPATHY TARGET ESTERASE/SWISS CHEESE D.MELANOGASTER 1 714 - -
Apr4g1268 833 SUPERFAMILY FabD/lysophospholipase-like 229 575 IPR016035 -
Apr4g1268 833 Gene3D Cytosolic phospholipase A2 catalytic domain 230 308 - -
Apr4g1268 833 Gene3D Cytosolic phospholipase A2 catalytic domain 309 492 - -
Apr4g1268 833 PANTHER TRIACYLGLYCEROL LIPASE-RELATED 1 714 - -
Apr4g1268 833 Pfam Domain of unknown function (DUF3336) 95 226 IPR021771 GO:0004806|GO:0006629
Apr4g1268 833 MobiDBLite consensus disorder prediction 793 819 - -
Apr4g1268 833 ProSiteProfiles Patatin-like phospholipase (PNPLA) domain profile. 233 436 IPR002641 GO:0006629
Apr4g1268 833 CDD Pat_SDP1-like 163 570 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1268 Apr-Chr4 11540122 11545307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1268 4 801 Acyl Lipid Metabolism Gene Families AT5G04040 75.341 0.0 1228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1268 K14674 - gmx:100791261 1493.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1268 4 11540122 11545307 Apr4g1268 4 11540122 11545307 ECH
Apr4g1268 4 11540122 11545307 Apr8g0878 8 9337212 9341149 PCT