Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1015 ATGGCAACCATCATCGCTGGCACCCCAACATCATCGATCACCCGCGCAAGTCTTGTGCACAAACGACCTGTTGGGGTTCCATCCTCTACCGTTATTGGACTGCCAACAATGGCTAAGATTGGAAGAGTGAGGTGCTCGATGGAAGGAAAACCTTCTGTCCAACAAAACAGCTCAAACATTGGGATGGGGGCATCCATGATAGCAGCAATCTGCGCCGCAACCATGTCAAGCCCAGCCATGGCTTTGGTGGATGAGAGAATGAGCACTGAAGGAACTGGGCTTCCCTTTGGGCTTAGCAACAACCTTCTTGGTTGGATCCTGTTGGGTGTCTTTGGTCTTATATGGGCTCTCTACACTGTCTACACTTCTACACTTGAAGACGATGAAGAGTCTGGATTGTCCCTCTAA 408 0.5 MATIIAGTPTSSITRASLVHKRPVGVPSSTVIGLPTMAKIGRVRCSMEGKPSVQQNSSNIGMGASMIAAICAATMSSPAMALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYTVYTSTLEDDEESGLSL* 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1015 135 Pfam Photosystem II reaction centre W protein (PsbW) 1 135 IPR009806 GO:0009507|GO:0009523|GO:0015979
Apr4g1015 135 PANTHER PHOTOSYSTEM II REACTION CENTER W PROTEIN, CHLOROPLASTIC 1 135 IPR009806 GO:0009507|GO:0009523|GO:0015979
Apr4g1015 135 PANTHER PHOTOSYSTEM II REACTION CENTER W 1 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1015 Apr-Chr4 8340509 8341499 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1015 K02721 - gmx:100306223 213.386
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1015 4 8340509 8341499 Apr4g1015 4 8340509 8341499 ECH
Apr8g0286 8 2394937 2395971 Apr4g1015 4 8340509 8341499 ECH
Apr4g1015 4 8340509 8341499 Apr8g0286 8 2394937 2395971 PCT