Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0947 ATGATACTTTCCAACCCCATATTCCTCACAACCCTCGCCGCCGTTTTCCTTTTATTCATGGTTAGGGCCATGCTCCTCCAAACGGGGCGCGCAAAGAGATTATGGAGAACCATCGAAGATTGGTTCCACGTGTACCAATTCCTCAAAGTCCCAGAACGCAACGAAGTCCCGCAGGCGCACCTCAACCCACTCTACAGTAAGCTCTCCCTTTACTTGCATTCCTTGCCTTCCATCGAAGACTCAGACTTCATCAACCTCTTCACTGGCAAAAAGCAAAACGACATCGTCCTCTCCCTCGCCCCCAACCAAATCATCCAGGACCATTTTCTCGGAGCCACTGTCTTCTGGTTCAACCAAACCGGAACCGAAACCGAAACCAGAACCTTCGTTCTAAAGATCAGAAAGGTGGATAGGCGCCGAATCCTGCGTCCATATCTGCAGCACATTCACGCCGTTGCTGACGAAATCGAGCTGCAAAGGAAGCGCGATTTGCGCCTCTTCATTAACGCCGATTCCTTTGGACGCTGGAGATCCGTTCCCTTCACGCACCCCTCCACGTTCGACACCATCGCCATGGAATCGGATCTCAAGAACAGAGTCAAATCCGATCTCGAATCGTTCCTAAGAGCCAGACAATACTACCACCGACTTGGCCGGGTCTGGAAACGGAGCTTCCTCCTCTACGGGGCCTCCGGCACCGGAAAATCGAGCTTCGTCGCCGCCATGGCTAATTTCCTCTGCTACGACGTGTACGACATCAACCTCTCCAAGGTCCCTAGCGATTCCGATCTCAAATTCCTCCTCCTCCAAACGACGCCGAAATCGGTTGTGGTCGTCGAGGACTTGGACCGGTTCCTGGCGGAGAAATCGACGAGAGTGAGCTCGTCGGGGATACTTAACTTCATGGACGGCCTTCTCAGTTCGTGTTGCGGCGAAGAGAGGGTGATGGTGTTCACGATGAACACGAAGGAGCACGTGGACCCGAACCTGCTTCGCCCAGGTCGGGTCGATGTCCATATCCATTTTCCGCTTTGTGATTTTTCTGCGTTCAAGACGCTGGCGAGTAGCTACCTTGGGGTTACGGAGCACAAGTTATTCCCTCAGGTTCAGGAGATTTTCCAAAGCGGGGCGAGTTTGAGCCCGGCTGAAATCGGTGAGTTGATGATCGCGAACCGGAACTCCCCGAGTCGGGCCATCAAATCGGTCATCACTGCCTTGCAAACGGACGGTGATGGCAGAGGGTGCGGGTTGGTCGGACGGCAGACAGATGATGATGACGTGGACGAACCTAATGCGGTGGTGTGCGGGGAGGGTCTCCATACGGTTAAGGATTTGCGGAAATTGTACGGTTTTTTCAGATTGCGGGTTGGCAAAAAATCTTTGCCGTCGAATACTTCCTTGCCCGCAAGCCCATTGCGATAA 1422 0.5338 MILSNPIFLTTLAAVFLLFMVRAMLLQTGRAKRLWRTIEDWFHVYQFLKVPERNEVPQAHLNPLYSKLSLYLHSLPSIEDSDFINLFTGKKQNDIVLSLAPNQIIQDHFLGATVFWFNQTGTETETRTFVLKIRKVDRRRILRPYLQHIHAVADEIELQRKRDLRLFINADSFGRWRSVPFTHPSTFDTIAMESDLKNRVKSDLESFLRARQYYHRLGRVWKRSFLLYGASGTGKSSFVAAMANFLCYDVYDINLSKVPSDSDLKFLLLQTTPKSVVVVEDLDRFLAEKSTRVSSSGILNFMDGLLSSCCGEERVMVFTMNTKEHVDPNLLRPGRVDVHIHFPLCDFSAFKTLASSYLGVTEHKLFPQVQEIFQSGASLSPAEIGELMIANRNSPSRAIKSVITALQTDGDGRGCGLVGRQTDDDDVDEPNAVVCGEGLHTVKDLRKLYGFFRLRVGKKSLPSNTSLPASPLR* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0947 473 PANTHER BNAC04G00800D PROTEIN 11 437 - -
Apr4g0947 473 Pfam ATPase family associated with various cellular activities (AAA) 226 344 IPR003959 GO:0005524|GO:0016887
Apr4g0947 473 SMART AAA_5 221 346 IPR003593 -
Apr4g0947 473 Pfam Domain associated at C-terminal with AAA 34 116 IPR025753 -
Apr4g0947 473 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 153 405 IPR027417 -
Apr4g0947 473 PANTHER BCS1 AAA-TYPE ATPASE 11 437 - -
Apr4g0947 473 CDD AAA 222 344 - -
Apr4g0947 473 Gene3D - 177 340 IPR027417 -
Apr4g0947 473 Gene3D - 341 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0947 Apr-Chr4 7691421 7693780 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0947 180 358 Miscellaneous Gene Families AT5G53170 26.020 5.22e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0947 - K08900 gmx:100805212 750.355
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0947 4 7691421 7693780 Apr4g0947 4 7691421 7693780 ECH
Apr10g1192 10 24257487 24259360 Apr4g0947 4 7691421 7693780 ECH
Apr4g0947 4 7691421 7693780 Apr10g1192 10 24257487 24259360 PCT