Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1192 ATGATTCCGTACAACACCGTGTTAATGGTTGTCCTCAGTGTGGTCGTTTGTTTCATGATTCGGTGGATGCTGTTCAAAACGGGAATGATATACACGACCAAGAAACTCTTGAGAAGGGTTCAAGATTGGTTCCACGTGTACCAGTTCATCAAAGTCCCAGAATTTAACGAAAGCATGCAGAGGAACCAGCTTTACCGCAAGGTCTCTCTCTATTTGCATTCTCTTCCTTCCATTGAAGATTCTGACTTCACCAACCTAATAACCGGTAACAACCAAAACGACATCGTTTTACGCCTCGACCCTGGCCAAACCATCGAGGACCGTTTTCTCGGTGCCACGCTCTTCTGGTTCAACCAAAAAACCGAACTGGACCGAACCGCCGCGTTCGTTCTCAGAATCAGAAAAACCGATAAACGACGGATTCTCCGCCCTTATCTTCACCACATCCACGCCGTCGCCGACGAGATTGAACACCAAGGGAAACGCCATTTGCGCCTCTTCATCAACGGCCCCGGCTCCGCCGGAGCGCGGTGGAGATCCGTTCCGTTCAATCATCCGGCGACGTTCGAGACCATAGCGATGGAGAAGGATCTCAAGAACAAGATCAAATCAGACCTCGAATCGTTCCTCAAGGCGAAGAAATATTACCAGCGGCTCGGCCGCGCGTGGAAACGGAGTTTCCTTTTGTACGGTCCCTCCGGCACCGGGAAATCGAGCTTCGTCGCTGCCATGGCGAATTTCCTCCGCTACGACGTCTACGACGTGGACCTCTCCAAAGTTCGCGGAGATTCCGATCTTAAGCACCTCCTCCTAGAAACGACGCCGAAGTCGATCGTCGTCGTGGAGGATCTGGATCGGTTCCTCACGGAGGACTCGGAATCAGCGGTTACGGCGTCGGGGATCCAGAACTTCATGGACGGAATCGTGAGTTCGTGTTGCGGCGAGGAGAGAGTAATGGTGTTCACGATGAACAGCAAGCTGTGCGTCGACCCGAACCTGTTGCGTCCTGGTCGGGTCGACGTGCACATTCACTTTCCAACGTGCGATTTCTCTGCGTTCAAGACGCTGGCGAGTAGTTACCTCGGAGTGAAAGAGCACAAGCTGTTTGCGCAAGTGGAAGATATTTTCCGGCACGGAGCGAGTCTGAGTCCCGCCGAGATCGGTGAGTTGATGATCGCGAATCGGAACTCGCCGAGTCGGGCGATAAAATCGGTAATCGGGGCGTTGCAAACGGACGGTGATGGGAGAAGGTGTGGTGTTATGATCGGACGGCAGTTAGAGGATGGTGACGTGGACGAAGTTACCGAAGGGGTGCTTTGTGGTGGGGACGGATTCTCTACGGTTAAGGATTTGCGGAAGTTTTACGGTTTTTTCAAATTACGGAACGCCAAAAGAACCCAACTGTCTAATTCGTTGGGCCACGATAGATAG 1431 0.5241 MIPYNTVLMVVLSVVVCFMIRWMLFKTGMIYTTKKLLRRVQDWFHVYQFIKVPEFNESMQRNQLYRKVSLYLHSLPSIEDSDFTNLITGNNQNDIVLRLDPGQTIEDRFLGATLFWFNQKTELDRTAAFVLRIRKTDKRRILRPYLHHIHAVADEIEHQGKRHLRLFINGPGSAGARWRSVPFNHPATFETIAMEKDLKNKIKSDLESFLKAKKYYQRLGRAWKRSFLLYGPSGTGKSSFVAAMANFLRYDVYDVDLSKVRGDSDLKHLLLETTPKSIVVVEDLDRFLTEDSESAVTASGIQNFMDGIVSSCCGEERVMVFTMNSKLCVDPNLLRPGRVDVHIHFPTCDFSAFKTLASSYLGVKEHKLFAQVEDIFRHGASLSPAEIGELMIANRNSPSRAIKSVIGALQTDGDGRRCGVMIGRQLEDGDVDEVTEGVLCGGDGFSTVKDLRKFYGFFKLRNAKRTQLSNSLGHDR* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1192 476 Pfam ATPase family associated with various cellular activities (AAA) 228 346 IPR003959 GO:0005524|GO:0016887
Apr10g1192 476 Pfam Domain associated at C-terminal with AAA 36 117 IPR025753 -
Apr10g1192 476 PANTHER BCS1 AAA-TYPE ATPASE 7 432 - -
Apr10g1192 476 PANTHER BNAC04G00800D PROTEIN 7 432 - -
Apr10g1192 476 Gene3D - 179 347 IPR027417 -
Apr10g1192 476 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 404 IPR027417 -
Apr10g1192 476 CDD AAA 224 346 - -
Apr10g1192 476 SMART AAA_5 223 349 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1192 Apr-Chr10 24257487 24259360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1192 209 410 Miscellaneous Gene Families AT2G29080 27.660 4.52e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1192 - K08900 gmx:100787809 726.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1192 10 24257487 24259360 Apr10g1192 10 24257487 24259360 ECH
Apr10g1192 10 24257487 24259360 Apr4g0947 4 7691421 7693780 ECH
Apr4g0947 4 7691421 7693780 Apr10g1192 10 24257487 24259360 PCT