Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0929 ATGGAAACCCTCCTCTTCCTAACCTTCTTCTCCTTCGCTCTCTCTTTCTCTCTCTCCACCGCTACATTCCCCTTCCAAACCCAAACATTGCCCCTTCACTCTCTCCCTCACGCACCAACCCTCTCATGGCCCCAGTCCGAACCACTCTCAGAACCCGACCCAACGGAAGCCGAACCCGAAGCTATCTCGCTTCACCTGCACCACATAGATACTCTCTCATACAACACAACCCCAGAGCAGCTCTTCAACTTGAGACTCCAACGAGACGCAGCAAGAGTAGAAGCCCTCACACTCGCAGCTCTCAACCAGACACACGCGCGCAGATCCGGCTCCAGTTTCAGCAGCTCCATTATATCAGGTCTAGCTCAGGGTAGCGGCGAGTACTTCACGCGCATAGGGGTAGGCACGCCCGCCAAGTATGTCTACATGGTGCTCGACACCGGAAGTGACGTCGTTTGGCTCCAATGCGCGCCGTGCCGAAAATGCTACTCCCAGACCGACCCTGTTTTTGACCCCACGAAATCCAGAACCTACGCCGGAATCCCCTGTGGGGCACCGCTCTGCCGTAGATTGGACTCTCCCGGCTGCAACAAGAAGAAGGTTTGCCAGTACCAGGTTTCTTACGGAGACGGTTCCTTCACGTTTGGTGATTTCTCCACCGAAACCCTGACGTTTCGAAGGAGCAGAGTGGCGCGCGTCGCACTAGGCTGTGGCCACGACAACGAAGGCCTCTTCATTGGGGCTGCCGGTCTGTTGGGCCTGGGCCGCGGGAGATTATCGTTTCCGGTCCAAACCGGGCGCCGGTTCAACCAGAAATTCTCTTATTGTCTCGTCGACCGATCAGCTTCGGCCAAACCTTCTTCCGTTGTTTTCGGCGAATCCGCCGTTTCCCGAACCGCCCGGTTCACTCCGCTCCTCAGAAACCCTAAGCTCGACACCTTCTACTACGTTGAACTTCTCGGGATCAGTGTCGGCGGTGCGCCGGTTCGCGGCCTCTCTGCCTCTCTCTTTCGCCTCGACCCCGCCGGGAACGGTGGCGTCATCATTGACTCGGGTACGTCTGTGACCCGACTCACCCGCCCCGCATACATTGCACTGAGAGACGCTTTTCGCGTCGGGGCCTCGCATCTGAAGCAAGCGCCGGAGTTCTCGCTGTTTGACACGTGCTTCGATTTGTCGGGGCTGACGGAGGTCAAGGTGCCGACGGTGGTGCTGCATTTCCGGGGTGCGGACGTGTCGCTGCCGGCGACGAACTACTTGATTCCGGTGGATAGCAGTGGGAGCTTCTGCTTCGCTTTCGCCGGAACTATGAGCGGGTTGTCCATAATTGGGAACATCCAGCAACAAGGGTTCCGGGTGGTGTACGACTTGGCGGGTTCTCGGGTCGGATTTGCCCCTAGAGGGTGCGTTTGA 1413 0.5796 METLLFLTFFSFALSFSLSTATFPFQTQTLPLHSLPHAPTLSWPQSEPLSEPDPTEAEPEAISLHLHHIDTLSYNTTPEQLFNLRLQRDAARVEALTLAALNQTHARRSGSSFSSSIISGLAQGSGEYFTRIGVGTPAKYVYMVLDTGSDVVWLQCAPCRKCYSQTDPVFDPTKSRTYAGIPCGAPLCRRLDSPGCNKKKVCQYQVSYGDGSFTFGDFSTETLTFRRSRVARVALGCGHDNEGLFIGAAGLLGLGRGRLSFPVQTGRRFNQKFSYCLVDRSASAKPSSVVFGESAVSRTARFTPLLRNPKLDTFYYVELLGISVGGAPVRGLSASLFRLDPAGNGGVIIDSGTSVTRLTRPAYIALRDAFRVGASHLKQAPEFSLFDTCFDLSGLTEVKVPTVVLHFRGADVSLPATNYLIPVDSSGSFCFAFAGTMSGLSIIGNIQQQGFRVVYDLAGSRVGFAPRGCV* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0929 470 Pfam Xylanase inhibitor C-terminal 315 465 IPR032799 -
Apr4g0929 470 Pfam Xylanase inhibitor N-terminal 128 292 IPR032861 -
Apr4g0929 470 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 347 358 IPR001969 GO:0004190|GO:0006508
Apr4g0929 470 CDD cnd41_like 127 469 IPR033873 -
Apr4g0929 470 PANTHER ASPARTYL PROTEASE FAMILY PROTEIN 2-LIKE 18 469 - -
Apr4g0929 470 Gene3D Acid Proteases 102 290 IPR021109 -
Apr4g0929 470 Gene3D Acid Proteases 291 470 IPR021109 -
Apr4g0929 470 ProSiteProfiles Peptidase family A1 domain profile. 128 465 IPR033121 -
Apr4g0929 470 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 143 154 IPR001969 GO:0004190|GO:0006508
Apr4g0929 470 PANTHER ASPARTYL PROTEASES 18 469 IPR001461 GO:0004190|GO:0006508
Apr4g0929 470 PRINTS Pepsin (A1) aspartic protease family signature 134 154 IPR001461 GO:0004190|GO:0006508
Apr4g0929 470 PRINTS Pepsin (A1) aspartic protease family signature 347 358 IPR001461 GO:0004190|GO:0006508
Apr4g0929 470 PRINTS Pepsin (A1) aspartic protease family signature 441 456 IPR001461 GO:0004190|GO:0006508
Apr4g0929 470 SUPERFAMILY Acid proteases 121 469 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0929 Apr-Chr4 7527302 7529042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0929 118 469 Miscellaneous Gene Families AT1G77480 27.273 8.21e-27 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0929 K22683 - gmx:100794269 800.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0929 4 7527302 7529042 Apr4g0929 4 7527302 7529042 ECH
Apr4g0929 4 7527302 7529042 Apr10g1214 10 24513183 24514774 PCT