Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1214 ATGGAAGGGAAAGTAAAAAATGCATTTTTCTCTTCCTTATTGGCGGTGTTTCTCTGTGTCAACACCGCTTCCGGTGACCCATTTCAGTTCCAAACCCATACTCTAGTCCTCCGTTCCCTCCCCCACACACCACCCACACTCGCTTGGCCCGAATCCGAGACCAAAGGGTCGGAACCGGATTCCTCCACTAACCTTTCCTTTCAACTCCACCACATAGACTCTCTCTCCTTCAACAAAACCCCAGAACAACTCTTCCACCTTAGGCTCCAAAGAGACTCTGCCAGGGTCAAAACCTTCACTTCCATTGTTTCAGCAGCTCTCAACAAAACCCAAGTTCCCGGATCCGGGTCGGGTTTCAGCAGCTCCGTAATTTCGGGTCTCGCACAGGGAAGTGGCGAGTACTTCACGCGCCTGGGCGTGGGCACGCCCCCGAGGTACGTGTACATGGTGCTCGACACAGGAAGCGACGTCATTTGGCTTCAGTGCGCGCCTTGCAAAAAATGCTATTCCCAAACCGACCCGGTTTTCGACCCGTCAAAATCCAAGTCCTTCGCTGGAATCCCCTGCGGGTCCCCCCTCTGCCGCCGGCTGGACTCGCCGGGATGCAACCAGAAGAATGCTTGCCAGTACGAGGTCTCCTACGGCGACGGTTCCTTCACCTCCGGCGACTTCTCCACCGAGACGTTAACGTTCCGACGCACCGCCGTGTCGCGCGTGGCCCTCGGCTGCGGCCACGACAACGAGGGCCTCTTTGTCGGCGCCGCCGGTTTGTTAGGTCTGGGCCGTGGCGGATTTTCTTTTCCTAGCCAAACCGGAAACCGGTTCAACCAGAAATTTTCTTACTGTTTAGTGGACCGAACCGCTTCCGCTAAACCGTCTTCGGTTGTTTTTGGTGACTTGGCCATCTCGCGAACCGCCCGGTTCACCCCTTTACTCAAGAACCCTAAGCTTGACACCTTTTATTACGTTGAGCTACTAGGAATCAGCGTGGGCGGTGCGCCGGTTCGCGGCATTTCGGCTTCGCTTTTTCGGCTCGACCCGACCGGGAATGGCGGCATTATTATCGACTCGGGTACGTCCGTGACTCGGCTAACTCGCCCTGCTTACGTGGCGCTTAGAAATGCTTTTCGGGTTGGGGCGGCACATTTGAAGCGGGCACCCGAATTCTCGCTTTTTGACACGTGCTTTGATCTTTCGGGTCTGACGGAGGTTAAGGTTCCCACGGTGGTGCTGCACTTCCGGGGTGCTGACGTGTCATTGCCCGCGGCCAATTATCTGATTCCGGTGGATACCAGTGGGAGTTTTTGCTTTGCGTTCGCCGGAACGATGAGTGGGTTGTCCATTATTGGGAATATTCAGCAGCAAGGGTTCCGGGTCGTGTATGACTTGGCCGGTTCTCGGGTCGGGTTTGCCCCGCGGGGGTGCGCATGA 1431 0.5618 MEGKVKNAFFSSLLAVFLCVNTASGDPFQFQTHTLVLRSLPHTPPTLAWPESETKGSEPDSSTNLSFQLHHIDSLSFNKTPEQLFHLRLQRDSARVKTFTSIVSAALNKTQVPGSGSGFSSSVISGLAQGSGEYFTRLGVGTPPRYVYMVLDTGSDVIWLQCAPCKKCYSQTDPVFDPSKSKSFAGIPCGSPLCRRLDSPGCNQKNACQYEVSYGDGSFTSGDFSTETLTFRRTAVSRVALGCGHDNEGLFVGAAGLLGLGRGGFSFPSQTGNRFNQKFSYCLVDRTASAKPSSVVFGDLAISRTARFTPLLKNPKLDTFYYVELLGISVGGAPVRGISASLFRLDPTGNGGIIIDSGTSVTRLTRPAYVALRNAFRVGAAHLKRAPEFSLFDTCFDLSGLTEVKVPTVVLHFRGADVSLPAANYLIPVDTSGSFCFAFAGTMSGLSIIGNIQQQGFRVVYDLAGSRVGFAPRGCA* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1214 476 PANTHER ASPARTYL PROTEASES 39 475 IPR001461 GO:0004190|GO:0006508
Apr10g1214 476 Pfam Xylanase inhibitor C-terminal 321 471 IPR032799 -
Apr10g1214 476 CDD cnd41_like 133 475 IPR033873 -
Apr10g1214 476 PRINTS Pepsin (A1) aspartic protease family signature 140 160 IPR001461 GO:0004190|GO:0006508
Apr10g1214 476 PRINTS Pepsin (A1) aspartic protease family signature 353 364 IPR001461 GO:0004190|GO:0006508
Apr10g1214 476 PRINTS Pepsin (A1) aspartic protease family signature 447 462 IPR001461 GO:0004190|GO:0006508
Apr10g1214 476 Pfam Xylanase inhibitor N-terminal 134 299 IPR032861 -
Apr10g1214 476 Gene3D Acid Proteases 298 476 IPR021109 -
Apr10g1214 476 Gene3D Acid Proteases 118 297 IPR021109 -
Apr10g1214 476 SUPERFAMILY Acid proteases 127 475 IPR021109 -
Apr10g1214 476 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 149 160 IPR001969 GO:0004190|GO:0006508
Apr10g1214 476 ProSiteProfiles Peptidase family A1 domain profile. 134 471 IPR033121 -
Apr10g1214 476 PANTHER ASPARTYL PROTEASE FAMILY PROTEIN 2-LIKE 39 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1214 Apr-Chr10 24513183 24514774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1214 111 475 Miscellaneous Gene Families AT1G77480 27.930 5.51e-28 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1214 K22683 - gmx:100791511 768.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1214 10 24513183 24514774 Apr10g1214 10 24513183 24514774 ECH
Apr4g0929 4 7527302 7529042 Apr10g1214 10 24513183 24514774 PCT