Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0888 ATGCTGGTTAGGAATCAGCAACTTGCAATGCTTGTTCTGTTTTTGAGGTCTTTCCTTCTAACTCCTATGGCGGGAGAAACTTCTTGGATCAGCCACTATGATGAAAGACTAAAGGAGACTGGGAAGTTTGATTCTTTTTTAGAACTTGGTGAAGAAGTTGAAAAAGAAGCTACTGCTGTTTCTGTGGATGTAATTTTGCCTGATGACTTGTTGGAACGAATCCTAGCCTATCTCCCCATTGCAAGCATTTTTAGAGCTGGTTGTGTGTGTAAGAGGTGGCATGAAATTGTTAATTCAGAGAGATTTTTATGGAACCTTTCACACGTTCTACCACAGAAACCTTGGTACTTCATGTTTACAACCTCCAATGAACCAATCGGTTATGCTTTTGACCCTGTCCTTCGGAAATGGTATGGCATTGAACTTCCATGCATTGGCACTTCTAATTGGTTCATTGCTTCATCATGTGGCCTGGTTTGCTTCATGGACAATGACAGTAGAAGTGAATTATGCATCTGTAACCCAATTACCAAAAGCTACAGGAAGCTTGAGGAGCCTCCAGGCTTGAAATTTTCTGATTACAGTGCATTAGCCATCTCAGTGAACAGGGAATCTCACAGCTATACTGTGGCAATTGCAAAATCTAAGCAAGTCCCTGATAACTTTTTCCAGTGGGATATCTCAATTCATTTATACGATTCAGAAAAAGCAACCTGGGTGACACCTCTAAGAGAAGTTTTGATGGGGTGGAGAGGTGGTGATGAGAGTGTGATTAGTAATGGGGTGCTATACTTTTTAGTTTATTCAACTGGGGGTGGCTCACCTGAAAATCGCCATTCCCTGATTGCATATAACATGTCCAACCGCTCTTCTCAAAGTAGCTTGACTAGGAGCTTTATTCCAGTACCTTGTTCTCTAACATGTGGCCGTTTGATGAATCTGAAAGAGAAGCTTGTAATGGTGGGAGGAATTGGTAAACCAGATCGACCTGACATAATAAAAGGAATTGGTATCTGGGTTCTAAATGATAGGAGATGGGAAGAGATTGCTCGAATGCCCCACAAATTTTTCCAGGGCTTTGGAGAGTTTGATGATGTTTTTGCTAGCAGTGGTGCAGATGATCTGATATATATTCAAAGTTATGGAGCTCCAGCACTTCTCATATTTGACATGAACCATAAACAATGGAAATGGTCGCAGAAGTGCCCTGTGAACAAAAGATTCCCGCTGCAACTTTTTACTGGCTTTTGCTTTGAGCCCAGACTTGAAATTGCTCCCTAG 1281 0.4161 MLVRNQQLAMLVLFLRSFLLTPMAGETSWISHYDERLKETGKFDSFLELGEEVEKEATAVSVDVILPDDLLERILAYLPIASIFRAGCVCKRWHEIVNSERFLWNLSHVLPQKPWYFMFTTSNEPIGYAFDPVLRKWYGIELPCIGTSNWFIASSCGLVCFMDNDSRSELCICNPITKSYRKLEEPPGLKFSDYSALAISVNRESHSYTVAIAKSKQVPDNFFQWDISIHLYDSEKATWVTPLREVLMGWRGGDESVISNGVLYFLVYSTGGGSPENRHSLIAYNMSNRSSQSSLTRSFIPVPCSLTCGRLMNLKEKLVMVGGIGKPDRPDIIKGIGIWVLNDRRWEEIARMPHKFFQGFGEFDDVFASSGADDLIYIQSYGAPALLIFDMNHKQWKWSQKCPVNKRFPLQLFTGFCFEPRLEIAP* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0888 426 SUPERFAMILY F-box domain 65 165 IPR036047 GO:0005515
Apr4g0888 426 Gene3D - 56 106 - -
Apr4g0888 426 PANTHER BNAA09G39300D PROTEIN 15 426 - -
Apr4g0888 426 TIGRFAM F_box_assoc_1: F-box protein interaction domain 156 358 IPR017451 -
Apr4g0888 426 Pfam F-box-like 66 105 IPR001810 GO:0005515
Apr4g0888 426 ProSiteProfiles F-box domain profile. 66 106 IPR001810 GO:0005515
Apr4g0888 426 Gene3D - 112 415 IPR015915 GO:0005515
Apr4g0888 426 SMART fbox_2 66 106 IPR001810 GO:0005515
Apr4g0888 426 PANTHER F-BOX FAMILY PROTEIN 15 426 IPR045048 -
Apr4g0888 426 SUPERFAMILY Galactose oxidase, central domain 119 405 IPR011043 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0888 Apr-Chr4 7162554 7166321 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0888 - - gmx:100817678 746.503
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0888 4 7162554 7166321 Apr4g0888 4 7162554 7166321 ECH
Apr4g0888 4 7162554 7166321 Apr10g1271 10 25067078 25070169 PCT