LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr4g0580	ATGGCGGAAACCTTTCTATTCACTTCTGAATCCGTGAATGAGGGTCACCCCGACAAGCTTTGCGACCAGATCTCTGATGCAGTGCTCGATGCTTGCCTTGAACAAGATCCTGACAGCAAAGTTGCCTGTGAGACATGCACCAAGACTAACATGGTCATGGTCTTTGGAGAGATTACAACAAAGGCCAACGTAGACTATGAAAAGATTGTCCGTGACACGTGCCGTAGCATTGGATTCATCTCTGATGATGTGGGTCTTGATGCTGACAAATGCAAGGTCTTGGTGAACATTGAGCAGCAAAGCCCTGATATTGCCCAGGGTGTGCATGGCCACTTCACCAAGCGCCCAGAGGAGGTTGGTGCTGGTGACCAGGGTCACATGTTTGGCTATGCCACTGATGAAACCCCTGAATACATGCCCTTGAGCCATGTCCTTGCAACCAAACTAGGAGCTCGTCTTACCGAGGTTAGGAAGAATGGTACCTGTGCCTGGTTGAGACCAGATGGTAAGACTCAAGTAACTGTTGAGTACTACAATGAGAATGGTGCTATGGTTCCACTTCGTGTCCACACTGTCCTGATTTCTACCCAACACGATGAGACTGTCAGCAATGACCAAATTGCTGCTGATCTTAAAGAGCATGTTATCAAGCCTGTGATTCCTGAGAAGTACCTTGATGAGAAGACCATCTTCCACCTTAACCCTTCTGGCCGTTTTGTCATTGGTGGCCCCCATGGTGATGCTGGTCTCACTGGAAGAAAGATTATCATCGATACTTATGGTGGCTGGGGTGCCCATGGTGGAGGTGCTTTTTCTGGCAAGGACCCTACCAAGGTTGACAGAAGTGGTGCCTATGTTGTAAGGCAGGCAGCAAAGAGTGTTGTGGCAAATGGCCTTGCTCGCAGGTGCCTTGTCCAAGTTTCTTATGCTATTGGTGTTCCTGAACCATTGTCTGTCTTTGTTGACAGTTATGGAACTGGGAAGATCCCTGACAAGGAGATCCTTCAAATTGTGAAGGAGAATTTTGACTTCAGACCTGGAATGATCACCATTAACTTGGACCTCAAGAGGGGTGGGCAAAGGTTTCTCAAAACTGCTGCTTATGGACACTTTGGAAGGGATGACCCAGACTTCACCTGGGAAACTGTGAAGCCACTCAAGTGGGAGAAACCCCAGGCTTAA	1182	0.4831	MAETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFISDDVGLDADKCKVLVNIEQQSPDIAQGVHGHFTKRPEEVGAGDQGHMFGYATDETPEYMPLSHVLATKLGARLTEVRKNGTCAWLRPDGKTQVTVEYYNENGAMVPLRVHTVLISTQHDETVSNDQIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYVVRQAAKSVVANGLARRCLVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILQIVKENFDFRPGMITINLDLKRGGQRFLKTAAYGHFGRDDPDFTWETVKPLKWEKPQA*	394

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr4g0580	393	Pfam	S-adenosylmethionine synthetase, central domain	118	239	IPR022629	GO:0004478\|GO:0006556
	Apr4g0580	393	PANTHER	S-ADENOSYLMETHIONINE SYNTHASE 1	1	392	-	-
	Apr4g0580	393	PANTHER	S-ADENOSYLMETHIONINE SYNTHETASE	1	392	IPR002133	GO:0004478\|GO:0005524\|GO:0006556
	Apr4g0580	393	Pfam	S-adenosylmethionine synthetase, N-terminal domain	5	102	IPR022628	GO:0004478\|GO:0006556
	Apr4g0580	393	Pfam	S-adenosylmethionine synthetase, C-terminal domain	241	381	IPR022630	GO:0004478\|GO:0006556
	Apr4g0580	393	SUPERFAMILY	S-adenosylmethionine synthetase	241	390	IPR022636	GO:0004478\|GO:0006556
	Apr4g0580	393	PIRSF	MAT	1	392	IPR002133	GO:0004478\|GO:0005524\|GO:0006556
	Apr4g0580	393	SUPERFAMILY	S-adenosylmethionine synthetase	116	240	IPR022636	GO:0004478\|GO:0006556
	Apr4g0580	393	Hamap	S-adenosylmethionine synthase [metK].	3	393	IPR002133	GO:0004478\|GO:0005524\|GO:0006556
	Apr4g0580	393	TIGRFAM	metK: methionine adenosyltransferase	6	386	IPR002133	GO:0004478\|GO:0005524\|GO:0006556
	Apr4g0580	393	CDD	S-AdoMet_synt	6	384	-	-
	Apr4g0580	393	ProSitePatterns	S-adenosylmethionine synthase signature 1.	120	130	IPR022631	GO:0004478\|GO:0006556
	Apr4g0580	393	ProSitePatterns	S-adenosylmethionine synthase signature 2.	267	275	IPR022631	GO:0004478\|GO:0006556
	Apr4g0580	393	Gene3D	-	118	381	-	-
	Apr4g0580	393	Gene3D	-	5	243	-	-
	Apr4g0580	393	Gene3D	-	12	280	-	-
	Apr4g0580	393	SUPERFAMILY	S-adenosylmethionine synthetase	4	110	IPR022636	GO:0004478\|GO:0006556

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr4g0580	Apr-Chr4	4813895	4816376	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr4g0580	K00789		-	gmx:100777770	776.933

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Apr4g0580	4	4813895	4816376	Apr8g0038	8	340535	343080	PCT