Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0506 ATGTCTTGGAGGATGGATTCTGCTCTCTCTGATGGCTCCACCATGCATGTTGATTTGGTTGGAGGGTACTACGATGCAGGGGACAATGTCAAGTTCGGTTTTCCCATGGCCTTTACCACCACCATGCTTTCGTGGAGTGTTGTTGAGTTTGGAGGGGTGATGAAAGGTGAGTTGCAGAATGCCAGAGAGGCCATTCGTTGGGCCACGGATTATCTTCTCAAAGCTACTGTACATCCAGACACAATTTATGTTCAGGTGGGAGATGCTGAGAAGGACCACGCTTGTTGGGAGAGACCTGAGGACATGGATACCCCAAGAAGTGTCTTTAAGATAGATAGAAACAACCCCGGTTCAGATGTGGCTGCAGAAACTGCTGCGGCTCTTGCAGCTGCTTCTCTGGCTTTCAGAAAAACTGACCCCACCTACTCCAAAACTTTGGTTAGGAGGGCTATCCGTGTTTTCCAGTTTGCTGATAAGTACAGGGGAGCCTACAGCACTGGGTTGAAGGCCATTGTGTGCCCCTTCTATTGCTCTTACTCTGGTTATCAGGATGAGCTGTTATGGGGTGCTGCTTGGTTGCACAAGGCTACTAAGAACCCAATGTACTTAAACTACATTAAGGTTAATGGACAGACCCTTGGTGCTGCAGACTCTGACAATATCTTTGGATGGGATAACAAACATGTTGGAGCAAGAATACTGCTTTCTAAGGAATTTCTTGTTCGGAAGGTGCAATCCCTTCATGACTACAAGGGTCACGCGGACAATTTCATCTGTTCTGTTATCCCTGGTGGCTCTTTCTCTTCTGCCCAATACACCCCAGGTGGGCTTCTGTTCAAGATGAGTGATAGCAACATGCAATATGTCACGTCCACTTCCTTCTTACTCCTAACTTATGCTAAATACTTGACCACAGCCCATATGGCTGTGAACTGTGGTGGTACCACTATAACTCCAAAGAGGCTTCGGGCTATAGCCAAAAAACAGGTGGATTACTTGCTAGGAGACAACCCCTTGAAAATGTCGTACATGGTGGGGTATGGTACGAGATACCCACGAAGGATACACCACAGGGGCTCATCCCTTCCGTCCATTGGTGTTCACCCCGGCAAGATCCAATGCTCAGAAGGATTCAGTGTGATGAACTCACAATCACCCAACCCCAACATTCTAGTGGGTGCCGTTGTTGGAGGGCCCGATCTGCATGATAGGTTCCCGGATGAACGGTCAGATTATGAGCAATCAGAACCAGCTACTTATATTAACGCACCTCTTGTAGGAGCACTTGCATATCTCGCACACTCATTTGGCCAACTGTAG 1320 0.4788 MSWRMDSALSDGSTMHVDLVGGYYDAGDNVKFGFPMAFTTTMLSWSVVEFGGVMKGELQNAREAIRWATDYLLKATVHPDTIYVQVGDAEKDHACWERPEDMDTPRSVFKIDRNNPGSDVAAETAAALAAASLAFRKTDPTYSKTLVRRAIRVFQFADKYRGAYSTGLKAIVCPFYCSYSGYQDELLWGAAWLHKATKNPMYLNYIKVNGQTLGAADSDNIFGWDNKHVGARILLSKEFLVRKVQSLHDYKGHADNFICSVIPGGSFSSAQYTPGGLLFKMSDSNMQYVTSTSFLLLTYAKYLTTAHMAVNCGGTTITPKRLRAIAKKQVDYLLGDNPLKMSYMVGYGTRYPRRIHHRGSSLPSIGVHPGKIQCSEGFSVMNSQSPNPNILVGAVVGGPDLHDRFPDERSDYEQSEPATYINAPLVGALAYLAHSFGQL* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0506 439 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 332 358 IPR018221 -
Apr4g0506 439 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 405 423 IPR033126 -
Apr4g0506 439 SUPERFAMILY Six-hairpin glycosidases 2 437 IPR008928 GO:0005975
Apr4g0506 439 Gene3D - 1 439 IPR012341 GO:0005975
Apr4g0506 439 PANTHER ENDO-1,4-BETA-GLUCANASE 1 439 - -
Apr4g0506 439 PANTHER ENDOGLUCANASE 17 1 439 - -
Apr4g0506 439 Pfam Glycosyl hydrolase family 9 2 429 IPR001701 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0506 Apr-Chr4 4215830 4217942 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0506 1 435 Glycoside Hydrolase AT1G02800 78.391 0.0 707
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0506 K01179 - gmx:100793900 815.839
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0506 4 4215830 4217942 Apr8g0112 8 900725 903121 PCT