Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0426 ATGTCCATATTATCAACCATGGACCCGCCTACTATTGATGTGGACCTAGGGTCTGAGAAGATTGAAGATGAGAAACAGGGAGGTCCCTCATTCCATTGTGATCTTTGTGATACCGAAGTAGTTCACAAGTTGGCTCAAACGTTCCTTCCAGGTCTAGGCAGTGCTTGTGTTGATAACACGTCGGGAGATCTCTTCAAGACTCCTGGTTCTGTGGCTGTTGATTTGAGAAAGGAAATGATAGAGTATCTTACCCAGAGAAGTGAATCATTTGTTGCTGAGTCTGTTATTCTGGAAGGTGGTCCGGACGGTGAAGTATCAGATCATCCTTTTGATATCATTTCTAATTTTGTTGATGACTTTGTGAGTTCAAAGAGGAATTTGTTTAGTCGGGTCTCTGGATGGCTGCTGAGTGACAAGAGAGAAGACAAAATTGATGATTTCGTTCAAGAGATGGAAATGAATGGGTTTTGGACCCTTGAAAGAAGAGAAACAATTGCAGAAACTTTGCTTAAGAATGTTGACTTCGAGAACTCGTATCATTGCCAGATGAGTTTTAATTCCGCAGAAGAACTCGCCAATCATGTTGATGATTGCAACTTCAGATCTATGATATGTGAAAATGAGGGATGCAATTCCAGGTTTTGTGCAGCTCATTTGAAGAAGCATGACTCAGCTTGTCCTTTCAAGATAATTCCATGTGAACAGAAGTGTTCTGATACCATTATGAGACGGGAGATGGACAGGCATTGTATAACTGTTTGTCCAATGAAGCTTGTAAATTGTCCTTTTTATGCAGTCGGTTGTAGATCAGCTGTTGCACAATGTATGATTGAAAAACACCGTTCAGACGACATTAATTCTCACTTGTGGCACTTGCTTAAAGGCATCCACAAGGAAGCTTCCGGTGACGATCTTAAGAGACGAGTGGAGCAAATTGTACAGGCATCATCAAGCAGCCGGTTAGCAGCAGCTCGGGATGTTCGATCTTTAAACTTTATCGTCAAGGACATTGAAGCTAAGCTTGGGCCTTTCGAAGTTCATGCTGTGGAGAAAAGCAGTTCAGAGACTGTTGCTAAGAATGAGGATAGGGAAGCTACTGGTTCCAATCTGAATAATAGTGAACAGAGCACACAAGCTCCAGATATGGTTAATTCCTCAGATAAAGCTGAACCAAGAGACATGGTGAATATGGATAGTGCAGTGAATAATGCCAAGAAAGAAGAGAGTGACGCTAGTTGCATTGAAAACAAAAGCTGTGAAGAGAGGACACAGACTTCAAATATGTCTAATTTATCTGATAAAGCTGAAATTAGCCTACAGAATGATGGCAGTGCACAAGTTTACGATGAGAACAAAGATGCTGCAACTAGTGAATTAAAAATCAAGGGCAAGGAAGAGAGTACTCAGACAAATATGGAAAATTTATCGAATGAAAAAATTAGTGCCACAAATGAGAGCAGTGCAGAGAATACTATCAAAAGCAGATCTGCTGAAGACAGTAAATTGGAGGATAAGAGCAGTGAACAAAGCATACAGAATTCGAAAATGGAAGCTAATTGTGATGCAGAGAATAATGTCAAGAACAAAGATATTGAAGATGATAGTTTGAAAGAGTGTACAAACAGATAA 1629 0.4027 MSILSTMDPPTIDVDLGSEKIEDEKQGGPSFHCDLCDTEVVHKLAQTFLPGLGSACVDNTSGDLFKTPGSVAVDLRKEMIEYLTQRSESFVAESVILEGGPDGEVSDHPFDIISNFVDDFVSSKRNLFSRVSGWLLSDKREDKIDDFVQEMEMNGFWTLERRETIAETLLKNVDFENSYHCQMSFNSAEELANHVDDCNFRSMICENEGCNSRFCAAHLKKHDSACPFKIIPCEQKCSDTIMRREMDRHCITVCPMKLVNCPFYAVGCRSAVAQCMIEKHRSDDINSHLWHLLKGIHKEASGDDLKRRVEQIVQASSSSRLAAARDVRSLNFIVKDIEAKLGPFEVHAVEKSSSETVAKNEDREATGSNLNNSEQSTQAPDMVNSSDKAEPRDMVNMDSAVNNAKKEESDASCIENKSCEERTQTSNMSNLSDKAEISLQNDGSAQVYDENKDAATSELKIKGKEESTQTNMENLSNEKISATNESSAENTIKSRSAEDSKLEDKSSEQSIQNSKMEANCDAENNVKNKDIEDDSLKECTNR* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0426 542 Pfam TRAF-type zinc finger 222 280 IPR001293 GO:0008270
Apr4g0426 542 PANTHER NEUROFILAMENT HEAVY POLYPEPTIDE-LIKE 4 523 - -
Apr4g0426 542 MobiDBLite consensus disorder prediction 403 417 - -
Apr4g0426 542 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 221 286 IPR013083 -
Apr4g0426 542 ProSiteProfiles Zinc finger TRAF-type profile. 222 269 IPR001293 GO:0008270
Apr4g0426 542 MobiDBLite consensus disorder prediction 492 510 - -
Apr4g0426 542 MobiDBLite consensus disorder prediction 468 491 - -
Apr4g0426 542 PANTHER TNF RECEPTOR ASSOCIATED FACTOR 4 523 IPR043211 -
Apr4g0426 542 MobiDBLite consensus disorder prediction 460 542 - -
Apr4g0426 542 Coils Coil 465 485 - -
Apr4g0426 542 MobiDBLite consensus disorder prediction 418 432 - -
Apr4g0426 542 MobiDBLite consensus disorder prediction 363 384 - -
Apr4g0426 542 MobiDBLite consensus disorder prediction 349 390 - -
Apr4g0426 542 MobiDBLite consensus disorder prediction 522 542 - -
Apr4g0426 542 MobiDBLite consensus disorder prediction 402 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0426 Apr-Chr4 3623049 3627146 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0426 - - gmx:100799182 835.099
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0426 4 3623049 3627146 Apr4g0426 4 3623049 3627146 ECH
Apr4g0426 4 3623049 3627146 Apr8g0730 8 7018445 7020793 PCT