Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0172 ATGGGTTCACTAGATAGATCAAAGAAGAAGGTTCATTTATGGAAAAAGGCCATGCTCCATTTTTCATTGTGTTTTGTGATGGGGTTCTTTACAGGCTTAGCTCCAACAGGTAAATCTTCTCTCTTTCCCACCAAAGTTGCTGCCTCAAATAGGACAGAATTTGCACCACAACCTAGTGAAATGTCACACCACACAACAAATGTCAATACAAGTTGGATAGCTCCAACGCCAGTTACCATGCCCATGAGGCCTAAAGTCCTTGGAAAGAAAACAACAACACCGAAGTTGCATGTAAAAGCACAGCCCCTGCTGAAGCCTAGAAGACTCATAATCATTGTGACTCCAACAAGCACCAAACTTCCCTACCAAACGGTGTTTTTGAGAAGGTTGGCAAATACTATAAAGCTGGTTCCTCAGCCATTGTTGTGGATTGTTGTGGAAGCTAAAACAGATTCCACAGAACTTCCAGAAATACTAAGGAAGACTGGCATCATGTATAGGCATGTGGTTTTCAAGGAGAACTTCACAGACTTAGAAGGTGAATTGAATCATCAGAGAAATCTTGCGCTTAAGCACATTGAACACCACAGACTCAACGGCATTGTACATTTTGCTGGCCTTTCCAATGTTTATGATCTCCAATTCTTCCATCAGCTTAGAGATATTGAGGTCTTTGGAACATGGCCAACCGCATTGTTAGTTGCACATAGGAAGAAAGTGAAAATCGAAGGACCTGTATGCGATTCCTCACAAGTCATTGGTTGGCATCTAAGGAATATGAACAATGAGACTGATACAATCACTCCTCCCATTCATATTTCAAGTTTTGCATTCAATAGCTCCATCCTCTGGGACCCCGAGAGATGGGGTCGCACTTCCTCCGTTCAAGACACTTCCCAGAATTCAATCAAGTTCGTGAAGCAAGTAGTTCTAGAAGATGAGGCTAAGTTAAAGGGAATTCCACCAGAGGACTGCTCCAAAATCATGCTCTGGCGTTTCAATTTTCGTGCCCGAACCCACTCAAATCACTAA 1032 0.4264 MGSLDRSKKKVHLWKKAMLHFSLCFVMGFFTGLAPTGKSSLFPTKVAASNRTEFAPQPSEMSHHTTNVNTSWIAPTPVTMPMRPKVLGKKTTTPKLHVKAQPLLKPRRLIIIVTPTSTKLPYQTVFLRRLANTIKLVPQPLLWIVVEAKTDSTELPEILRKTGIMYRHVVFKENFTDLEGELNHQRNLALKHIEHHRLNGIVHFAGLSNVYDLQFFHQLRDIEVFGTWPTALLVAHRKKVKIEGPVCDSSQVIGWHLRNMNNETDTITPPIHISSFAFNSSILWDPERWGRTSSVQDTSQNSIKFVKQVVLEDEAKLKGIPPEDCSKIMLWRFNFRARTHSNH* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0172 343 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 109 343 IPR029044 -
Apr4g0172 343 PANTHER GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE BETA-1,3-GLUCURONYLTRANSFERASE 1 341 IPR005027 GO:0015018|GO:0016020
Apr4g0172 343 CDD GlcAT-I 108 337 IPR005027 GO:0015018|GO:0016020
Apr4g0172 343 SUPERFAMILY Nucleotide-diphospho-sugar transferases 108 340 IPR029044 -
Apr4g0172 343 Pfam Glycosyltransferase family 43 130 334 IPR005027 GO:0015018|GO:0016020
Apr4g0172 343 PANTHER BETA-1,4-XYLOSYLTRANSFERASE IRX9-RELATED 1 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0172 Apr-Chr4 1426498 1428744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0172 1 339 Glycosyltransferase AT2G37090 60.969 6.02e-152 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0172 K20869 - gmx:100777749 630.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0172 4 1426498 1428744 Apr4g0172 4 1426498 1428744 ECH
Apr4g0172 4 1426498 1428744 Apr8g0464 8 3959786 3962367 PCT