Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1929 ATGGATTATCGCTATGTTCTGGGAGGAATTATGTGTTGTAGTATGACTTTTGTGTTTGTTGTGTTCAGTTTTGGAGCAAAGAAGAAAGGCCAAGGTTCAAGTTCAATACATGTAAAAGGCAATGGGTATGCAAAGACATCAGAGAATGGAACATGTCCACAAGAGGGTGCAGAAAGTGCTGAAATCATCATTGTGGGTGCTGGTGTTGCTGGTGCAGCTCTTGCTTACACACTTGGGAAGGATGGACGGAGAGTGCATGTGATTGAAAGGGACTTGAGTGAACCTGACAGGATCGTGGGTGAATTGCTACAACCTGGAGGGTATCTCAAGTTAATTGAGTTGGGTCTTGAGGATTGTGTGGATGAGATTGATGCTCAGCAAGTATTGGGTTATGCTCTTTACAAGGATGGCAAGAATACAAAGCTGTCTTATCCATTGGAAAAATTTAACTCTGATGTTTCTGGGAGAAGCTTTCATAATGGCCGTTTCATACAGAGAATGCGAGAAAAGGCTGCATCTCTTCCAAATGTAAAATTGGAACAAGGAACCGTCACATCTCTACTTGAAGAAAACGGGACCATCACAGGTGTGCACTTCAAAACCAAAGGTGGACCAGAGTTCACAGCAAAGGCTCCCCTTACCATAGTATGTGACGGTTGTTTTTCCAATTTGAGGCGTTCTCTTTGCAATCCTAAGGTTGAAGTACCCTCTCATTTTGTTGGTCTAGTCTTGGAGAATTGTACTCTTCCATATGCAAATCATGGACACGTCATCTTAGGTGATCCTTCACCTATTTTGTTTTATCCCATCAGTAGCACTGAGATTCGCTGTTTGGTTGATGTTCCTGGCCAAAAGTTACCTTCCCTTGCTAATGGTGAAATGGCCTGTTATTTGAAAACTGTGGTTGCTCCTCAGGTTCCTCCAGAGTTGTATACTTCTTTTATAGCAGCTGTTCACAAAGGAAACATAAGAACCATGCCAAATAGAAGTATGCCTGCATCCCCTTATCCCACACCTGGGGCCCTTCTGATGGGTGATGCATTCAATATGCGACACCCTTTAACAGGAGGAGGAATGACTGTGGCTTTATCTGATATTGTTGTGCTAAGGGATCTACTTAAACCTCTACATGATCTGCGTGATGCTTCTGCTCTTTGCAGATACCTTGAATCATTCCACACCCTACGCAAGCCAGTGGCATCTACAATAAACACATTAGCCGGTGCATTGTACAAAGTGTTTTGTGCATCTCCTGATCCAGCTAGAAAGGAAATGCGCCAAGCATGTTTTGATTATTTGAGCCTTGGAGGTGTTTTCTCAAATGGACCAATAGCGCTACTCTCTGGTCTGAATCCTCGTCCATTGAGCTTGGTTCTCCACTTCTTTGCGGTGGCTATATATGGTGTTGGCCGCTTGCTTATACCCTTCCCTTCTCCAAATCGGATGTGGCTCGGAGCTAGATTGATTTCAGGTGCATCAGGTATCATATTCCCCATTATTAGGGCTGAAGGAGTAAGACAAATGTTCTTCCCAGCAACTGTGCCAGCCTACTACAGAACACCTCCTCTTTATTTACATTCATGA 1584 0.4369 MDYRYVLGGIMCCSMTFVFVVFSFGAKKKGQGSSSIHVKGNGYAKTSENGTCPQEGAESAEIIIVGAGVAGAALAYTLGKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVDEIDAQQVLGYALYKDGKNTKLSYPLEKFNSDVSGRSFHNGRFIQRMREKAASLPNVKLEQGTVTSLLEENGTITGVHFKTKGGPEFTAKAPLTIVCDGCFSNLRRSLCNPKVEVPSHFVGLVLENCTLPYANHGHVILGDPSPILFYPISSTEIRCLVDVPGQKLPSLANGEMACYLKTVVAPQVPPELYTSFIAAVHKGNIRTMPNRSMPASPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRDLLKPLHDLRDASALCRYLESFHTLRKPVASTINTLAGALYKVFCASPDPARKEMRQACFDYLSLGGVFSNGPIALLSGLNPRPLSLVLHFFAVAIYGVGRLLIPFPSPNRMWLGARLISGASGIIFPIIRAEGVRQMFFPATVPAYYRTPPLYLHS* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1929 527 Pfam Squalene epoxidase 210 483 IPR013698 GO:0004506|GO:0016021|GO:0050660
Apr3g1929 527 Gene3D - 49 414 IPR036188 -
Apr3g1929 527 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 61 83 - -
Apr3g1929 527 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 210 225 - -
Apr3g1929 527 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 338 353 - -
Apr3g1929 527 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 353 369 - -
Apr3g1929 527 Pfam NAD(P)-binding Rossmann-like domain 64 90 - -
Apr3g1929 527 PANTHER SQUALENE MONOOXYGENASE 1 525 IPR040125 GO:0004506|GO:0016126
Apr3g1929 527 SUPERFAMILY FAD/NAD(P)-binding domain 61 435 IPR036188 -
Apr3g1929 527 PANTHER SQUALENE MONOOXYGENASE-RELATED 1 525 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1929 Apr-Chr3 35297409 35300662 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1929 19 522 Miscellaneous Gene Families AT1G58440 77.426 0.0 800
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1929 K00511 - gmx:100800329 937.562
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1929 3 35297409 35300662 Apr3g1929 3 35297409 35300662 ECH
Apr3g1929 3 35297409 35300662 Apr1g1297 1 21908015 21911531 PCT