Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1297 ATGGATTATGAGTATATTCTGGGAGGGATAATAGCTTCTAGTTTGGTGCTTGTGTTTGTTCTATACGGTTCTGCATCAAAGAAGAAGGCCCCAGATTCAGTACATGCAGAAAGTAATGGTAGTATTCTAAGGACTTCAGAAAATCGAAAACACCATGAAGATATCTCAGAAAATGCCGATATCATCATTGTTGGTGCTGGGGTTGCTGGCGCAGCCCTTGCTTACACTCTTGGGAAGGATGGGAGAAGAGTGCATGTTATTGAAAGGGACCTGACTGAACCAGACAGGATTGTGGGTGAATTGCTACAGCCTGGGGGTTATCTCAAGTTAATTGAATTGGGTCTTGAAGATTGTGTGGATGAAATTGATGCTCAGCAAGTTTTTGGCTATGCTCTTTATAAGGATGGGAAAAATACCAAGCTCTCTTATCCCTTGGAAAAATTTCACTCTGATGTGTCTGGACGAAGCTTTCACAATGGCCGTTTCATACAGAGAATGCGAGAGAAGGCTTCATCTCTTCCAAATGTAAAATTAGAACAAGGAACTGTCACATCTCTACTGGAAGAAAATGGAATCGTCAAAGGAGTACACTACAAATCCAAGAGTGGACAAGAACTCACAGCAAAGGCTCCCCTGACCATTGTATGTGATGGTTGTTTTTCCAATTTGAGACGTTCTCTTTGCAACCCAAAGGTTGAGGTGCCATCTCATTTTGTTGGTTTGGTCCTGAAGAACTGCAATCTTCCATATGCAAACCATGGGCACGTTATCTTGGGTGATCCTTCTCCCATTTTGTTTTATCCCATCAGTAGCACTGAGATCAGGTGTTTGGTTGATGTACCTGGCCAAAAATTGCCTTCCCTTGGTAACGGTGACATGGCTCATTATTTGAAAACAGTAGTAGCTCCTCAGGTTCCCCAAGAACTTCGTGCTTCTTTTATATCAGCAGTTGACAGAGGAAGCATAAGAAGCATGCCAAACAGAAGCATGCCTGCATCTCCTTTCCCCACACCTGGTGCCCTTCTCATGGGAGATGCTTTTAATATGCGTCACCCTTTAACCGGAGGGGGAATGACTGTGGCTTTGTCTGACACTGTTTTGCTAAGGAATCTTCTTAGACCTTTGCATGATTTGCATGATGCTTCTGCTCTTTGCAAATATCTTGAATCATTCTACACCCTGCGCAAGCCAGTGGCATCTACAATAAACACATTAGCTGGGGCATTATACAAGGTGTTTTGTGCATCTCCTGACCCAGCTAGTAAGGAAATGCGCCAGGCATGTTTTGATTATTTGAGCCTTGGTGGTGCTTTCTCTGATGGACCAATAGCTCTACTTTCTGGTCTAAATCCTCGTCCATTAAGCTTGGTTCTCCACTTCTTTGCGGTGGCTATATATGGTGTTGGCCGCTTGCTAATACCTTTTCCTTCTCCAAAACGAATGTGGATCGGAGCTAGATTGATTTCTGGTGCGTCAGGTATAATTTTCCCCATTATCAAGGCTGAAGGAATTAGGCAAATGTTTTTCCCAGCAACTGTGCCAGCATATTACAGAGCACCTCCTACCAGTTTGCATAATTGA 1581 0.4345 MDYEYILGGIIASSLVLVFVLYGSASKKKAPDSVHAESNGSILRTSENRKHHEDISENADIIIVGAGVAGAALAYTLGKDGRRVHVIERDLTEPDRIVGELLQPGGYLKLIELGLEDCVDEIDAQQVFGYALYKDGKNTKLSYPLEKFHSDVSGRSFHNGRFIQRMREKASSLPNVKLEQGTVTSLLEENGIVKGVHYKSKSGQELTAKAPLTIVCDGCFSNLRRSLCNPKVEVPSHFVGLVLKNCNLPYANHGHVILGDPSPILFYPISSTEIRCLVDVPGQKLPSLGNGDMAHYLKTVVAPQVPQELRASFISAVDRGSIRSMPNRSMPASPFPTPGALLMGDAFNMRHPLTGGGMTVALSDTVLLRNLLRPLHDLHDASALCKYLESFYTLRKPVASTINTLAGALYKVFCASPDPASKEMRQACFDYLSLGGAFSDGPIALLSGLNPRPLSLVLHFFAVAIYGVGRLLIPFPSPKRMWIGARLISGASGIIFPIIKAEGIRQMFFPATVPAYYRAPPTSLHN* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1297 526 Pfam NAD(P)-binding Rossmann-like domain 63 89 - -
Apr1g1297 526 SUPERFAMILY FAD/NAD(P)-binding domain 59 433 IPR036188 -
Apr1g1297 526 MobiDBLite consensus disorder prediction 30 51 - -
Apr1g1297 526 Pfam Squalene epoxidase 209 482 IPR013698 GO:0004506|GO:0016021|GO:0050660
Apr1g1297 526 PANTHER SQUALENE MONOOXYGENASE-RELATED 1 525 - -
Apr1g1297 526 Gene3D - 51 433 IPR036188 -
Apr1g1297 526 PANTHER SQUALENE MONOOXYGENASE 1 525 IPR040125 GO:0004506|GO:0016126
Apr1g1297 526 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 60 82 - -
Apr1g1297 526 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 209 224 - -
Apr1g1297 526 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 337 352 - -
Apr1g1297 526 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 352 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1297 Apr-Chr1 21908015 21911531 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1297 59 522 Miscellaneous Gene Families AT1G58440 81.034 0.0 805
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1297 K00511 - gmx:100796946 946.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1297 1 21908015 21911531 Apr1g1297 1 21908015 21911531 ECH
Apr3g1929 3 35297409 35300662 Apr1g1297 1 21908015 21911531 PCT