Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1926 ATGGCGGTGGAGTATTCATGCTGCGAATCGGGGTTCTTCGTGCACATAGTCGTGATCGTGCTGCTGGTCATATTCGCGGGCTTGATGTCGGGCCTCACTTTGGGCCTTATGTCGTTGAGCCTCGTTGATCTTGAGGTTCTCGCTAAGTCTGGTACTCCTCAGGATCGTAAGCATGCTGAGAAGATATTGCCTGTTGTCAAGAACCAGCATTTATTGCTTTGCACCTTGCTAATTTGCAATGCTGCGGCCATGGAGGCACTTCCTATTTTTCTTGATGGTCTTGTTACTGCATGGGGTGCTATCCTGATTTCAGTGACATTGATTCTTCTGTTCGGAGAGATTATACCCCAATCAGTTTGTTCGCGGTATGGTTTGGCAATTGGTGCATCAGTGGCTCCCTTTGTTCGCGTGCTTGTATGGATATGTTTTCCAGTTGCTTTTCCAATTAGTAAGTTGTTGGACTTTTTGCTTGGTCATCGACATGAAGCCCTTTTCCGTAGAGCTGAGTTGAAAACACTTGTAGACTTGCATGGTAATGAGGCTGGAAAAGGTGGGGAATTAACACATGATGAAACAACGATCATTGCTGGGGCACTTGAACTCAGTGAGAAGACAGCCAGTGATGCCATGACTCCCATATCTGAAACATTTGCTATTGATATTAATTCAAAGCTTGATAGGGAACTAATGAATGAAATATTGGAGAAAGGGCATAGCAGAGTCCCAGTCTATTATGAGCAGCCTACAAACATTATTGGACTAATACTGGTCAAGAATTTATTGACAGTTCATCCAGAAGATGAAGCACCCGTGAAGAGTGTAACCATACGCAGGATTCCAAGGGTTCCAGAAAGTATGCCACTCTATGACATTTTGAATGAGTTCCAGAAGGGCCATAGCCACATGGCTGTTGTTGTGAGCCGGTGTGACAAGACGAAGCAACAAACTCCCAATAACAATGCAAATGACTCAGTCAGAGACGTGAAGGTAGATATTGATGGTGAAAAGCCTCCCCAAGAGAAAGTTGGGAAACCCAAGATGCCACTTCATAAGTGGAAAAGCTTTCCAAATACAAACAAGTCAAATAGGGGAGGTTCTCGGAGCAGAAAATGGTCAAAAAATATGTACTCGGATATTTTGGAGATTGATGGAAGTCCCCTTCCAAAGCTCCCTGAAGAAGAAGAAGCTGTAGGAATTATCACGATGGAAGATGTCATTGAAGAACTTTTACAGGAGGAAATCTTTGATGAGACAGATCATCATTTTGAAGATTCATGA 1278 0.4358 MAVEYSCCESGFFVHIVVIVLLVIFAGLMSGLTLGLMSLSLVDLEVLAKSGTPQDRKHAEKILPVVKNQHLLLCTLLICNAAAMEALPIFLDGLVTAWGAILISVTLILLFGEIIPQSVCSRYGLAIGASVAPFVRVLVWICFPVAFPISKLLDFLLGHRHEALFRRAELKTLVDLHGNEAGKGGELTHDETTIIAGALELSEKTASDAMTPISETFAIDINSKLDRELMNEILEKGHSRVPVYYEQPTNIIGLILVKNLLTVHPEDEAPVKSVTIRRIPRVPESMPLYDILNEFQKGHSHMAVVVSRCDKTKQQTPNNNANDSVRDVKVDIDGEKPPQEKVGKPKMPLHKWKSFPNTNKSNRGGSRSRKWSKNMYSDILEIDGSPLPKLPEEEEAVGIITMEDVIEELLQEEIFDETDHHFEDS* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1926 425 Pfam Cyclin M transmembrane N-terminal domain 18 190 IPR002550 -
Apr3g1926 425 PANTHER AND COBALT EFFLUX PROTEIN CORC, PUTATIVE-RELATED 1 425 - -
Apr3g1926 425 MobiDBLite consensus disorder prediction 333 370 - -
Apr3g1926 425 PANTHER ANCIENT CONSERVED DOMAIN PROTEIN-RELATED 1 425 IPR045095 GO:0010960
Apr3g1926 425 ProSiteProfiles CBS domain profile. 210 271 IPR000644 -
Apr3g1926 425 ProSiteProfiles CNNM transmembrane domain profile. 8 191 IPR002550 -
Apr3g1926 425 MobiDBLite consensus disorder prediction 333 347 - -
Apr3g1926 425 CDD CBS_pair_CorC_HlyC_assoc 205 306 IPR044751 -
Apr3g1926 425 Gene3D - 191 325 IPR046342 -
Apr3g1926 425 SUPERFAMILY CBS-domain pair 194 411 IPR046342 -
Apr3g1926 425 MobiDBLite consensus disorder prediction 354 370 - -
Apr3g1926 425 Gene3D - 381 417 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1926 Apr-Chr3 35272044 35278404 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1926 K16302 - gmx:100801937 771.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1926 3 35272044 35278404 Apr3g1926 3 35272044 35278404 ECH
Apr3g1926 3 35272044 35278404 Apr1g1300 1 21922549 21926171 PCT