Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1300 ATGGCGGTGGAGTACAAGTGTTGTGATATGGAGTTCATGAAACGCATAATGATGATCGTCATGCTTGTGGTGTTCGCTGGAATGATGTCAGGACTCACCTTAGGCCTCATGTCCTTGAGCCTTGTTGATCTTGAGGTCCTTGCTAAGTCTGGCACCCCTCAGGATCGCAACCATGCTGCGAAGATATTGCCTGTTGTCAGAAACCAACATCTATTGCTTTGCACACTCCTAATTTGCAATGCTATAGCCATGGAGGCACTTCCAGTTTTTCTTAATAGACTTGTTGTTTGGTGGGGTGCTATCCTGATTTCGGTGACATTAATTCTTCTGTTTGGTGAGATTATGCCTCAATCAATCTGTTCAAGGTATGGTTTAGCAATTGGTGCAACAGTGGCTCCAATTGTTCGTGGTCTTGTGTGGATATGTTTTCCTGTTGCTTATCCAATTAGTAAGCTGTTGGACTTTTTGCTAGGGCAGCGGCATAAAGCCCTTTTCCGCAGAGCTGAGTTGAAAGAACTTGTAAATATGCATGGCAATGAGGCTGGAAAAGGTGGGGAACTGACACACCATGAAACAACAATCATTGCTGGAGCACTGGAACTCGCTGAGAAGACAGCTAGTGATGCTATGACTCCCATAACTGAAACATTTTCTATTGACATTAATTCAAAGCTTGATAGCGATGTGATGAGTCTAATATTGGAGAAAGGGCACAGCAGAGTCCCTGTCTATTATGAGCAGCCTACAAATATTACTGGACTTATCTTGGTCAAGAATTTATTGACTATTGACCCAGAAGATGAAGCACCTGTGAAAAGTGTGACCATACGCAGAATTCCAAGGGTCCCAGAAACAATGCCACTGTATGATATTTTGAATGAGTTCCAGAAGGGCCACAGCCACATGGCTGTTGTTGTCAGACATTGTGACAAGACAGGGAAGCAATCTTCCAACGATAGTACCTATGAGTCAGGGAGAGATGTGAAGGTGGATATTGATGTTGAGAAGCCTCCCAAACAGAAAGTTTTGAAAACCAAGATGTCATTCTTTAAGTGGAAAAGCTTTTCAAACTTAAATAATTCGAATATGGGTGGTTCTAAGAGCAGAAAATGGTCAAAAAATATGTACTCTGATATTTTGGAAATAGATGAAAGTTCATTTCCAAAGCTGCCCGAAAAAGAAGAAATCGTTGGAATAATTACAATGGATGATGTTATTGAAGAACTTTTACAGGAGGAGATCTTTGATGAGACAGATCATCACTTTGAAGACTCATGGAAATCATCTTTCCATAAGACACATACTCATATTGGTGTTTAG 1320 0.4121 MAVEYKCCDMEFMKRIMMIVMLVVFAGMMSGLTLGLMSLSLVDLEVLAKSGTPQDRNHAAKILPVVRNQHLLLCTLLICNAIAMEALPVFLNRLVVWWGAILISVTLILLFGEIMPQSICSRYGLAIGATVAPIVRGLVWICFPVAYPISKLLDFLLGQRHKALFRRAELKELVNMHGNEAGKGGELTHHETTIIAGALELAEKTASDAMTPITETFSIDINSKLDSDVMSLILEKGHSRVPVYYEQPTNITGLILVKNLLTIDPEDEAPVKSVTIRRIPRVPETMPLYDILNEFQKGHSHMAVVVRHCDKTGKQSSNDSTYESGRDVKVDIDVEKPPKQKVLKTKMSFFKWKSFSNLNNSNMGGSKSRKWSKNMYSDILEIDESSFPKLPEKEEIVGIITMDDVIEELLQEEIFDETDHHFEDSWKSSFHKTHTHIGV* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1300 439 PANTHER ANCIENT CONSERVED DOMAIN PROTEIN-RELATED 1 425 IPR045095 GO:0010960
Apr1g1300 439 SUPERFAMILY CBS-domain pair 194 411 IPR046342 -
Apr1g1300 439 Pfam Cyclin M transmembrane N-terminal domain 18 185 IPR002550 -
Apr1g1300 439 ProSiteProfiles CNNM transmembrane domain profile. 8 191 IPR002550 -
Apr1g1300 439 PANTHER AND COBALT EFFLUX PROTEIN CORC, PUTATIVE-RELATED 1 425 - -
Apr1g1300 439 CDD CBS_pair_CorC_HlyC_assoc 205 306 IPR044751 -
Apr1g1300 439 Gene3D - 375 417 IPR046342 -
Apr1g1300 439 Gene3D - 191 324 IPR046342 -
Apr1g1300 439 ProSiteProfiles CBS domain profile. 210 271 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1300 Apr-Chr1 21922549 21926171 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1300 K16302 - gmx:100799797 697.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1300 1 21922549 21926171 Apr1g1300 1 21922549 21926171 ECH
Apr3g1926 3 35272044 35278404 Apr1g1300 1 21922549 21926171 PCT