Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1922 ATGGGGACATACAAAGTTTCATTTTCTGTTCTGTGTTTCTTGGTCTTAGCCATCATATCTCATCATGTTGCTCATGCCCAAGATTCACAAAAAGACTATGTGAGTGCCCATAACGATGCAAGGTCAGAGGTGGGTGTTCAAGGTTTGTCTTGGAATGACACTGTAGCTCAGTACGCACAAAATTATGCTAATAAACGTAAAAGTGATTGCCAACTCATCCACTCAAATGGACCTTATGGGGAGAACCTAGCAGGAAGCACAGGTGACGTAAGTGGTGTTGATGCAGTGAAACTGTGGGTTGATGAGAAATCATACTATGATTACGAATCTAATTCTTGTGTTGGTGGAGAGTGTGGGCACTATACACAGGTGGTTTGGAGAAATTCAATCCACCTTGGATGTGCCAAAGTACGTTGTGATAATGGTGGCACATTTGTTATTTGCAACTATGATCCCCGTGGCAACTATATTGGGGAAAGACCTTATTAA 489 0.4192 MGTYKVSFSVLCFLVLAIISHHVAHAQDSQKDYVSAHNDARSEVGVQGLSWNDTVAQYAQNYANKRKSDCQLIHSNGPYGENLAGSTGDVSGVDAVKLWVDEKSYYDYESNSCVGGECGHYTQVVWRNSIHLGCAKVRCDNGGTFVICNYDPRGNYIGERPY* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1922 162 CDD CAP_PR-1 30 162 - -
Apr3g1922 162 SUPERFAMILY PR-1-like 8 162 IPR035940 -
Apr3g1922 162 ProSitePatterns CRISP family signature 1. 119 129 IPR018244 GO:0005576
Apr3g1922 162 ProSitePatterns CRISP family signature 2. 145 156 IPR018244 GO:0005576
Apr3g1922 162 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 4 162 IPR001283 -
Apr3g1922 162 Gene3D CAP 27 162 IPR035940 -
Apr3g1922 162 SMART SCP_3 28 158 IPR014044 -
Apr3g1922 162 Pfam Cysteine-rich secretory protein family 35 150 IPR014044 -
Apr3g1922 162 PANTHER PATHOGENESIS-RELATED PROTEIN 1B-LIKE 4 162 - -
Apr3g1922 162 PRINTS Allergen V5/Tpx-1 family signature 49 67 IPR001283 -
Apr3g1922 162 PRINTS Allergen V5/Tpx-1 family signature 95 108 IPR001283 -
Apr3g1922 162 PRINTS Allergen V5/Tpx-1 family signature 118 134 IPR001283 -
Apr3g1922 162 PRINTS Allergen V5/Tpx-1 family signature 145 158 IPR001283 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1922 Apr-Chr3 35240446 35240934 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1922 K13449 - gmx:100805116 259.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1922 3 35240446 35240934 Apr3g1922 3 35240446 35240934 ECH
Apr3g1922 3 35240446 35240934 Apr1g1302 1 21955150 21955658 PCT