Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1302 ATGAGGTCCCCATACCATGTGATCATAGCCGTATTTTTGTTCATTTGTACGACCTTGTCTCATATTTGCATAGCCCAAAACTCCCCTCAAGACTTTCTAGAGGTGCACAACCAGGCTCGTGCAGAGGTTGGTGTTGGTCCTCTCACATGGAACCACACCCTCGAAGCCTATGCTCAAAAATATGCGAATGAGAGAATCCCTGACTGTGATCTCCAACACTCTATGGGCCCTTTTGGTGAGAACCTTGCTGAGGGTTATGGCGAAATGAGGGGTTCAGATGCTGTTAAGTTTTGGCTCACTGAGAAGCCTTACTATGACTACCACTCTAACTCTTGTGTCCATGATGAGTGCCTCCATTACACTCAAATTGTTTGGCGTGATTCCGTTCATCTTGGGTGTGCTAGAGCTAAGTGTAACAATGGCTGGGTTTTCGTCATTTGCAGCTATTCTCCACCGGGAAACATTGAAGGCGAAAGACCTTATTGA 486 0.463 MRSPYHVIIAVFLFICTTLSHICIAQNSPQDFLEVHNQARAEVGVGPLTWNHTLEAYAQKYANERIPDCDLQHSMGPFGENLAEGYGEMRGSDAVKFWLTEKPYYDYHSNSCVHDECLHYTQIVWRDSVHLGCARAKCNNGWVFVICSYSPPGNIEGERPY* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1302 161 Pfam Cysteine-rich secretory protein family 33 149 IPR014044 -
Apr1g1302 161 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 2 161 IPR001283 -
Apr1g1302 161 ProSitePatterns CRISP family signature 2. 144 155 IPR018244 GO:0005576
Apr1g1302 161 Gene3D CAP 26 161 IPR035940 -
Apr1g1302 161 CDD CAP_PR-1 29 161 - -
Apr1g1302 161 SMART SCP_3 27 157 IPR014044 -
Apr1g1302 161 PANTHER - 2 161 - -
Apr1g1302 161 SUPERFAMILY PR-1-like 19 161 IPR035940 -
Apr1g1302 161 PRINTS Allergen V5/Tpx-1 family signature 48 66 IPR001283 -
Apr1g1302 161 PRINTS Allergen V5/Tpx-1 family signature 94 107 IPR001283 -
Apr1g1302 161 PRINTS Allergen V5/Tpx-1 family signature 117 133 IPR001283 -
Apr1g1302 161 PRINTS Allergen V5/Tpx-1 family signature 144 157 IPR001283 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1302 Apr-Chr1 21955150 21955658 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1302 K13449 - gmx:100527778 313.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1302 1 21955150 21955658 Apr1g1302 1 21955150 21955658 ECH
Apr3g1922 3 35240446 35240934 Apr1g1302 1 21955150 21955658 PCT