Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1473 ATGGGTCAGGGGTTGAGTTGCAGAGGGAGCCATGAACATGGCCTCTTTCGTGCTGTGCAACATGGGGACCTTGACACTGTTGCAGCTTTGTTACAGACACACCCTTCTCTTCTGCATCACTCCACTGTCTATGATCATCACTCTCCTCTTCATATTGCAGCTGCTAATGGCCAGATCCAGGTTTTATCTTGGCTTTTAGATGGATCTGTGAATCCAGATGTGTTGAATCGCCAAAAGCAGACACCGCTTATGTTGGCAGCAATGCACGGCAAGACCGCCTGTGTGGAAAAGCTCCTTGAAGCGGGTGCTAATGTATTAATGTTTGATGCTTGTTATGGAAGAACTTGCTTGCACTATGCCGCCTATTATGGCCATTCTTCTTGCCTTAAGGCGATTCTTTCTGCTGCTCAATCAAGTCCAGTGGCTGCTTCTTGGGGTTTTGCTCGGTTTGTGAATATTAGAGATGGTAGAGGAGCAACACCATTGCACTTGGCAGCACGTCAAAGACGGCCTGAATGTGTACATATTCTATTGTACAGTGGAGCTCTTGTTTGTGCTTCAACTGGCAGATATGGTTGTCCTGGGAGCACTCCTCTTCATCTTGCAGCCAAAGGGGGATCTCTTGATTGCATCCGTGAACTCTTGGCATGGGGTGCTGATCGCCTTCAACGTGATGCCTCAGGGAGGATACCGTATATGGTTGCTCTGAAACATAGACATGGCGCATGTGCAGCATTGCTAAATCTTTCATCTGCAGAGCCTCTTGTCTGGCCATCATCTTTGAAGGTCATCAGTGAGCTTAATCCAGAGGCCAAAGAATTATTAGAGCAGGCCTTGATGGACGCGAACAGGGAAAGAGAGAAAAACATATTGAAAGGGAGTGTTCACACTCTTCCATCTCCGCCACACCCTGATGGGGTAGATGACAATATCTCTGAGGTTAGTGAGACGGAGTTATGCTGCATATGCTTTGAGCAGGTGTGTACAATTGAAGTCCAAGAGTGTGGTCACCAGATGTGTGCACAATGCACACTAGCCCTTTGTTGTCACAACAAGCCCAACCCTTCTACTTCTCGTCTCATTCCACCAGTTTGTCCATTTTGCCGAAGCACCATAGCTAGATTGGTGGTTGTCAAAAAAGAAAGCCATGATGACATTGATCAAGATGGTTTTGACATCACTTGTTCCAAACCAAGCAAATCAAGGAAGCCCAGGAACATGAACGAGGGTGGTAGCACTAGCAGCAGCTTCAAGGGATTATCAAGTGTGAATTCATTTGGAAAAATGGGTAGCCGCAGCTCTGGAAGGATTGCTGCTGAAAATGAGTGGGATGATGATAAACAAAATTGA 1350 0.4667 MGQGLSCRGSHEHGLFRAVQHGDLDTVAALLQTHPSLLHHSTVYDHHSPLHIAAANGQIQVLSWLLDGSVNPDVLNRQKQTPLMLAAMHGKTACVEKLLEAGANVLMFDACYGRTCLHYAAYYGHSSCLKAILSAAQSSPVAASWGFARFVNIRDGRGATPLHLAARQRRPECVHILLYSGALVCASTGRYGCPGSTPLHLAAKGGSLDCIRELLAWGADRLQRDASGRIPYMVALKHRHGACAALLNLSSAEPLVWPSSLKVISELNPEAKELLEQALMDANREREKNILKGSVHTLPSPPHPDGVDDNISEVSETELCCICFEQVCTIEVQECGHQMCAQCTLALCCHNKPNPSTSRLIPPVCPFCRSTIARLVVVKKESHDDIDQDGFDITCSKPSKSRKPRNMNEGGSTSSSFKGLSSVNSFGKMGSRSSGRIAAENEWDDDKQN* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1473 449 ProSiteProfiles Ankyrin repeat region circular profile. 157 182 - -
Apr3g1473 449 Pfam Ankyrin repeats (3 copies) 112 183 IPR002110 GO:0005515
Apr3g1473 449 Pfam Ankyrin repeats (3 copies) 15 109 IPR002110 GO:0005515
Apr3g1473 449 ProSiteProfiles Ankyrin repeat region circular profile. 45 77 - -
Apr3g1473 449 MobiDBLite consensus disorder prediction 405 431 - -
Apr3g1473 449 ProSiteProfiles Ankyrin repeat profile. 78 110 IPR002110 GO:0005515
Apr3g1473 449 MobiDBLite consensus disorder prediction 389 449 - -
Apr3g1473 449 Gene3D - 198 251 IPR036770 -
Apr3g1473 449 SUPERFAMILY Ankyrin repeat 15 247 IPR036770 -
Apr3g1473 449 SMART ANK_2a 112 142 IPR002110 GO:0005515
Apr3g1473 449 SMART ANK_2a 227 256 IPR002110 GO:0005515
Apr3g1473 449 SMART ANK_2a 45 74 IPR002110 GO:0005515
Apr3g1473 449 SMART ANK_2a 157 186 IPR002110 GO:0005515
Apr3g1473 449 SMART ANK_2a 194 223 IPR002110 GO:0005515
Apr3g1473 449 SMART ANK_2a 10 39 IPR002110 GO:0005515
Apr3g1473 449 SMART ANK_2a 78 107 IPR002110 GO:0005515
Apr3g1473 449 Gene3D - 147 197 IPR036770 -
Apr3g1473 449 PANTHER HOMEOBOX PROTEIN WARIAI 1 443 - -
Apr3g1473 449 ProSiteProfiles Ankyrin repeat region circular profile. 194 220 - -
Apr3g1473 449 Pfam Ankyrin repeats (many copies) 194 234 IPR002110 GO:0005515
Apr3g1473 449 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 305 387 IPR013083 -
Apr3g1473 449 ProSiteProfiles Ankyrin repeat profile. 157 189 IPR002110 GO:0005515
Apr3g1473 449 SUPERFAMILY RING/U-box 314 374 - -
Apr3g1473 449 MobiDBLite consensus disorder prediction 389 404 - -
Apr3g1473 449 ProSiteProfiles Ankyrin repeat profile. 45 77 IPR002110 GO:0005515
Apr3g1473 449 ProSiteProfiles Ankyrin repeat profile. 194 226 IPR002110 GO:0005515
Apr3g1473 449 ProSiteProfiles Ankyrin repeat region circular profile. 78 105 - -
Apr3g1473 449 Gene3D - 9 146 IPR036770 -
Apr3g1473 449 ProSiteProfiles Zinc finger RING-type profile. 320 369 IPR001841 -
Apr3g1473 449 PANTHER UBIQUITIN-PROTEIN LIGASE XBAT31, PUTATIVE-RELATED 1 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1473 Apr-Chr3 29346751 29350027 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1473 12 330 Miscellaneous Gene Families AT5G60070 27.003 1.08e-18 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1473 - - gmx:100800611 855.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1473 3 29346751 29350027 Apr3g1473 3 29346751 29350027 ECH
Apr2g2287 2 27898074 27901458 Apr3g1473 3 29346751 29350027 PCT