Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2287 ATGGGTCAGAGCCTCAGTTGCAGTGCCACCCATGACCGTGCCCTCTTCACTGCCGTCCAGCAAGGTGACCTTCAAATTCTCTCTTCTCTGTTAGAGGCTCATCCATCTCTTTTGCACCAAACAACTCTCTATGATCGCCACTCTGCTCTTCATCTTGCCGCAGCCAATGGCCAGATCCAGATTTTGTCTCGGCTTTTAGATGGATCTGTTAACCCAGATGTTTTAAATCGCCAAAAACAGACTCCTCTTATGTTGGCAGCAATGCACGGGAATATAGCTTGTGTGGAGAAGCTCCTTGAAGCTGGAGCTAATGTGTTGATGTTTGATACAGTTTATGGAAGAACCTGCTTGCACTATGCTGCCTACTATGGTCATTCTTCTTGCCTCAAGGCTATTCTTTCTTCTGCTCAATCTAGTCCAGTGGCTGCTTCTTGGGGATTTGCTCGGTTTGTGAATGTTAGAGATGGAAAGGGTGCAACGCCATTGCATTTGGCAGCTCGTCAAAGAAGGTCTGAATGCGTGCATATTTTATTGGATAGTGGAGCTCTTGTTTGTGCTTCAACTGGTGGATATGGCTGTTCTGGGAGCACTCCCCTGCATCTAGCAGCTAGAGGGGGATCACTGGATTGTATTCGTGAGTTGTTGGCATGGGGTGGTGATCGTCTTCAACGTGATGCATCTGGGCGAATACCATACATGGTTGCTCTGAAACACAAACATGGAGCGTGTGCTTCGTTATTAAATCCTACATCTGCCGAACCTCTTGTTTGGCCATCTCCATTGAAGTTCATTAGTGAGCTTAATCCAGAAGCCAAAGCTTTATTAGAACAGGCCTTGATGGATGCAAACAGAGAAAGGGAGAAAAACATATTGAAAGGGAGTTCTTACTCTGTTTCATCTCCATCACATTCTGATGGTGTAGCTGACAATATGTCTGAGGTTAGTGAGTCGGAATTATGCTGCATCTGTTTTGAACAAGTATGCACAATTGAAGTTCAAAACTGTGGCCACCAGATGTGTGCACAATGCACACTTGCCCTATGTTGCCACAACAAGCCCAACCCTTCCACTTCCTGTCTTACTCCACCAGTTTGTCCCTTTTGTCGGAGTGCCATAACAAGACTCATGGTTGTGAAGATTGAACGGCACGATGAAACAGATCAGGACAGTGTTGACATGAATTGCTCTAAGCTAAGCAAGTCAAGGAGGTTCAGAAACTTGAATGACAGTGGAAGCAGCAGCTTCAAGGGATTGTCGAGTGTAAATTCATTCAGTAAGTTGGGTGGCCGCAGCTCTGGAAGGATTGCTGCTGAGTGGACTGATAAACAGTGA 1332 0.4595 MGQSLSCSATHDRALFTAVQQGDLQILSSLLEAHPSLLHQTTLYDRHSALHLAAANGQIQILSRLLDGSVNPDVLNRQKQTPLMLAAMHGNIACVEKLLEAGANVLMFDTVYGRTCLHYAAYYGHSSCLKAILSSAQSSPVAASWGFARFVNVRDGKGATPLHLAARQRRSECVHILLDSGALVCASTGGYGCSGSTPLHLAARGGSLDCIRELLAWGGDRLQRDASGRIPYMVALKHKHGACASLLNPTSAEPLVWPSPLKFISELNPEAKALLEQALMDANREREKNILKGSSYSVSSPSHSDGVADNMSEVSESELCCICFEQVCTIEVQNCGHQMCAQCTLALCCHNKPNPSTSCLTPPVCPFCRSAITRLMVVKIERHDETDQDSVDMNCSKLSKSRRFRNLNDSGSSSFKGLSSVNSFSKLGGRSSGRIAAEWTDKQ* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2287 443 Pfam Ankyrin repeats (many copies) 195 234 IPR002110 GO:0005515
Apr2g2287 443 MobiDBLite consensus disorder prediction 410 443 - -
Apr2g2287 443 ProSiteProfiles Ankyrin repeat region circular profile. 78 105 - -
Apr2g2287 443 ProSiteProfiles Zinc finger RING-type profile. 320 369 IPR001841 -
Apr2g2287 443 ProSiteProfiles Ankyrin repeat region circular profile. 157 182 - -
Apr2g2287 443 ProSiteProfiles Ankyrin repeat region circular profile. 194 220 - -
Apr2g2287 443 PANTHER HOMEOBOX PROTEIN WARIAI 1 443 - -
Apr2g2287 443 ProSiteProfiles Ankyrin repeat profile. 78 110 IPR002110 GO:0005515
Apr2g2287 443 ProSiteProfiles Ankyrin repeat profile. 45 77 IPR002110 GO:0005515
Apr2g2287 443 MobiDBLite consensus disorder prediction 410 429 - -
Apr2g2287 443 SUPERFAMILY Ankyrin repeat 12 250 IPR036770 -
Apr2g2287 443 Gene3D - 148 197 IPR036770 -
Apr2g2287 443 ProSiteProfiles Ankyrin repeat region circular profile. 45 77 - -
Apr2g2287 443 SUPERFAMILY RING/U-box 314 375 - -
Apr2g2287 443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 303 389 IPR013083 -
Apr2g2287 443 Gene3D - 198 251 IPR036770 -
Apr2g2287 443 SMART ANK_2a 78 107 IPR002110 GO:0005515
Apr2g2287 443 SMART ANK_2a 45 74 IPR002110 GO:0005515
Apr2g2287 443 SMART ANK_2a 194 223 IPR002110 GO:0005515
Apr2g2287 443 SMART ANK_2a 157 186 IPR002110 GO:0005515
Apr2g2287 443 SMART ANK_2a 227 256 IPR002110 GO:0005515
Apr2g2287 443 SMART ANK_2a 10 39 IPR002110 GO:0005515
Apr2g2287 443 SMART ANK_2a 112 142 IPR002110 GO:0005515
Apr2g2287 443 Gene3D - 8 146 IPR036770 -
Apr2g2287 443 Pfam Ankyrin repeats (3 copies) 15 109 IPR002110 GO:0005515
Apr2g2287 443 Pfam Ankyrin repeats (3 copies) 112 183 IPR002110 GO:0005515
Apr2g2287 443 ProSiteProfiles Ankyrin repeat profile. 194 226 IPR002110 GO:0005515
Apr2g2287 443 ProSiteProfiles Ankyrin repeat profile. 157 189 IPR002110 GO:0005515
Apr2g2287 443 PANTHER UBIQUITIN-PROTEIN LIGASE XBAT31, PUTATIVE-RELATED 1 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2287 Apr-Chr2 27898074 27901458 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2287 12 237 Miscellaneous Gene Families AT5G02620 25.641 3.91e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2287 - - gmx:100786708 811.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2287 2 27898074 27901458 Apr2g2287 2 27898074 27901458 ECH
Apr2g2287 2 27898074 27901458 Apr3g1473 3 29346751 29350027 PCT