Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1461 ATGGCAACGGATTCTACTAATGGAGACCATCAAAAAGCAACAAAGCAACCTCCACTGCCATCTCCCTTGCGTTTTTCCAAGTTCTTTCAGTCCAATATGAGAATTCTGGTTACTGGAGGAGCTGGATTTATTGGCTCTCACCTAGTTGACAGATTGATGGAAAATGAAAAAAATGAGGTCATTGTTGTTGACAACTTCTTCACTGGATCTAAAGACAACCTTAGAAAATGGATTGGCCATCCAAGATTTGAGCTAATTCGTCATGATGTCACAGAGCAATTGTTGATTGAGGTGGATCAAATCTACCATCTTGCATGCCCTGCTTCTCCTATTTTCTACAAATACAATCCTGTAAAGACGATTAAGACAAATGTGATTGGAACGCTGAACATGCTTGGGCTTGCTAAGCGTGTTGGAGCAAGGATTTTGCTAACATCTACTTCAGAAGTATATGGGGACCCTCTTGTCCATCCACAGCCAGAAAGCTATTGGGGCAATGTTAACCCCATTGGTGTTCGGAGTTGTTATGATGAGGGCAAGCGTGTGGCAGAAACTTTGATGTTTGATTATCATAGGCAGCATGGAATAGAAATACGCATTGCAAGAATATTTAACACATATGGACCACGCATGAATATTGATGATGGGCGTGTTGTCAGCAACTTCATTGCTCAAGCAATTCGTGGTGAACCCTTAACCGTCCAAGTTCCGGGAACTCAAACACGCAGTTTCTGCTATGTCTCTGACATGGTTGATGGCCTTATTCGTTTAATGGAAGGGGAAAACACTGGTCCAATCAACATTGGGAACCCAGGTGAGTTTACAATGATTGAACTGGCCGAGAATGTGAAAGAGCTTATTAATCCAGCAGTGGAGATAAACATGGTTGAGAACACTCCTGACGATCCTCGTCAGAGAAAACCAGACATAACTAAAGCAAAGGAATTGCTGGGATGGGAGCCAAAGGTGAAGTTGCGTGATGGCCTTCCCCTCATGGAAGAAGATTTTCGTCAGAGGCTTGGGGTTGCAAAGAAGAACTAA 1041 0.4304 MATDSTNGDHQKATKQPPLPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDRLMENEKNEVIVVDNFFTGSKDNLRKWIGHPRFELIRHDVTEQLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQPESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQVPGTQTRSFCYVSDMVDGLIRLMEGENTGPINIGNPGEFTMIELAENVKELINPAVEINMVENTPDDPRQRKPDITKAKELLGWEPKVKLRDGLPLMEEDFRQRLGVAKKN* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1461 346 Gene3D - 161 342 - -
Apr3g1461 346 Gene3D - 30 160 - -
Apr3g1461 346 Pfam GDP-mannose 4,6 dehydratase 36 330 IPR016040 -
Apr3g1461 346 PANTHER UDP-GLUCURONIC ACID DECARBOXYLASE-RELATED 1 346 IPR044516 GO:0042732|GO:0048040|GO:0070403
Apr3g1461 346 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 28 340 IPR036291 -
Apr3g1461 346 MobiDBLite consensus disorder prediction 1 21 - -
Apr3g1461 346 CDD UGD_SDR_e 33 337 - -
Apr3g1461 346 PANTHER UDP-GLUCURONATE DECARBOXYLASE-RELATED 1 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1461 Apr-Chr3 29239364 29243985 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1461 30 345 Miscellaneous Gene Families AT1G02000 23.563 2.60e-16 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1461 K08678 - gmx:100819843 674.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1461 3 29239364 29243985 Apr3g1461 3 29239364 29243985 ECH
Apr2g2280 2 27839228 27843860 Apr3g1461 3 29239364 29243985 ECH
Apr3g1461 3 29239364 29243985 Apr2g2280 2 27839228 27843860 PCT