Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1430 ATGGAGTTTCTCTATTTACTCTACGCACTTCCAACATTGTACACGTGTTTCCTGATCTGGAGGTGGTTGGAGGAGAAAAGGGACAAAGAGTGTTACATATTGGATTACCAATGCTACAAGCCTTCAGATGATAGAATGCTTGGAACAGAGTTTTGTGGGAAAATAATCAGAAGGACAGAGAACTTGGGTCCGAACGAGTACAGGTTTCTCCTTAAAGCCATAGTGAGTTCCGGCATTGGGGAGCAAACTTACGCGCCAAGAAACGTGTTCGACGGACGCGAGGCGAGTCCAACGGTGTTGGATGGAATCTCGGAGATGGAAGAGTTTTTCAACGACAGCATTGAGAAGGTTCTTTCCAGGTCAGGAATTTCTCCTTCTGAGATCGATGTGCTTGTGGTTAACATCTCTATGCTCGCTGCTGTTCCTTCATTGTCCTCACGAATCATTAACCGTTACAAAATGAGGCATGACATTAAGGTTTACAATCTCACTGGGATGGGTTGTAGTGCTAGTCTTATATCATTGGACATTGTTAAGAACATTTTTAAGTCCCAAAGGAACAAGTTGGCTCTTTTAGTGACTTCTGAATCTTTAAGTCCTAATTGGTATTCTGGGAATGATAGATCAATGATTCTTGCCAACTGTTTGTTCCGTTCTGGTGGGTGTGCTATTCTTTTGACCAACAAAAGGGCCTTGAAGCACAGGGCCATGTTGAAGTTGAAGTGTTTGGTGAGGACCCATCATGGGGCAAGAGAAGAGGCTTATGGTTGTTGTATTCAGAAGGAGGATGATCAAGGTAGGCTTGGGTTTCACCTTGGAAAGTCTCTTCCAAAGGCAGCTACAAGGGCTTTTGTTGATAACTTGAGGGTTATAGCACCCAAGATTTTGCCAATGAGGGAGTTGTTAAGGTTTTTGGTGGTGTCACTTATTAAAAAAATGAACAAAAGTAGTTCTCCTAAGTCTGTGGGTGTAGTGGGTGCAACCAAGTCACCGTTGAATTTCAAAACTGGGGTTGACCATTTTTGCTTGCACACTGGAGGAAAGGCTGTGATAGATGGGATTGGAATGAGCTTGGATCTTAGTGAGTATGATCTTGAGCCAGCGAGGATGACACTGCACCGTTTTGGGAACACGTCAGCAAGTAGCCTTTGGTATGTGTTAGGGTACATGGAGGCAAAGAAGAGGCTCAAGAAAGGTAACAGAGTATTCATGATAAGCTTTGGTGCTGGCTTTAAATGTAACAGCTGTTTGTGGGAGGTAATGAAGGACCTGGGGGATGATGCCAATGTGTGGGACTGCATTGATAACTACCCTCCAGAGACATTGGCCAACCCTTTCCTGGAGACCTATGGTTGGATCAACGAAGTTGAGGATCCATATACCTATGAAAACATTCCAGATTTTCTCAAGTGA 1413 0.4395 MEFLYLLYALPTLYTCFLIWRWLEEKRDKECYILDYQCYKPSDDRMLGTEFCGKIIRRTENLGPNEYRFLLKAIVSSGIGEQTYAPRNVFDGREASPTVLDGISEMEEFFNDSIEKVLSRSGISPSEIDVLVVNISMLAAVPSLSSRIINRYKMRHDIKVYNLTGMGCSASLISLDIVKNIFKSQRNKLALLVTSESLSPNWYSGNDRSMILANCLFRSGGCAILLTNKRALKHRAMLKLKCLVRTHHGAREEAYGCCIQKEDDQGRLGFHLGKSLPKAATRAFVDNLRVIAPKILPMRELLRFLVVSLIKKMNKSSSPKSVGVVGATKSPLNFKTGVDHFCLHTGGKAVIDGIGMSLDLSEYDLEPARMTLHRFGNTSASSLWYVLGYMEAKKRLKKGNRVFMISFGAGFKCNSCLWEVMKDLGDDANVWDCIDNYPPETLANPFLETYGWINEVEDPYTYENIPDFLK* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1430 470 PANTHER 3-KETOACYL-COA SYNTHASE 1 459 - -
Apr3g1430 470 PANTHER 3-KETOACYL-COA SYNTHASE 1 459 IPR012392 GO:0006633|GO:0016020|GO:0016747
Apr3g1430 470 PIRSF Very_long_ch_3-ktacl-CoA_syn 2 452 IPR012392 GO:0006633|GO:0016020|GO:0016747
Apr3g1430 470 CDD CHS_like 25 418 - -
Apr3g1430 470 SUPERFAMILY Thiolase-like 18 232 IPR016039 GO:0016746
Apr3g1430 470 Pfam FAE1/Type III polyketide synthase-like protein 25 312 IPR013601 GO:0006633|GO:0016020|GO:0016747
Apr3g1430 470 SUPERFAMILY Thiolase-like 243 421 IPR016039 GO:0016746
Apr3g1430 470 Gene3D - 77 420 IPR016039 GO:0016746
Apr3g1430 470 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 338 419 IPR013747 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1430 Apr-Chr3 28910103 28911974 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1430 19 467 Acyl Lipid Metabolism Gene Families AT2G28630 70.022 0.0 674
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1430 K15397 - gmx:100810048 821.617
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1430 3 28910103 28911974 Apr3g1430 3 28910103 28911974 ECH
Apr2g2257 2 27687393 27688820 Apr3g1430 3 28910103 28911974 ECH
Apr2g2257 2 27687393 27688820 Apr3g1430 3 28910103 28911974 PCT