Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2257 ATGGAGTTCCTCACTTTACTTTATGGTGTTACTATATTGTACTTGTGTTTCCTGATCTGGAAGTTCTTTGATCAGAGAAGGGACCAAGAGTGTTACATATTGGACTACCAACTGTACAAGCCAAGCGATGAAAGAAAGCTTGGAACTGAGTGCTGCGGGAAGATCATTGGAAGGAACACGCACTTAGGTCTGAATGAGTACAAGTTCCTTCTAAAGGCCGTTGTTAGCTCAGGCATTGGTGAGGAAACTTATGCACCAAGTAACGTGATAGAGGGTCGTGAAGCAAATCCCACATTGATGGATGGGATCACAGAGATGGAGGAGTTTTTCTATGACAGCATTGCCAAGCTTCTAACCAGGTCAGGAATTTCCCCCTCACAGATTGATGTCCTTGTGGTGAATGTGTCAATGTTCGCTGCTATTCCTTCATTAACTTCAAGAATCATTAACCATTACAAAATGAGGCAAGACATAAAGGCTTACAACCTCACTGGCATGGGTTGTAGCGCTAGCCTTATTTCTTTGGACATCATTAAGAATATTTTCAAGTCCCAAAAGAACAAGTGTGCTCTTTTGGTGACTTCAGAGTCTCTCAGTCCAAATTGGTATGCTGGCAATGACAGATCAATGATTCTTGCCAACTGTTTGTTCCGGACTGGTGGCTGTGTCATTCTCTTGACAAATAATAGGTCCTTAAAGCACAGAGCTATCATGAAGTTGAAGTGCTTGGTGAGGACCCATCATGGGGCTAAAGAAGATTCCTATAGTAGTTGCTACCAAAAGGAAGACGAGCAAGGTAGGCTTGGGTTTTACCTTGCCAAAAATCTTCCCAAGGCAGCTACAAGGGCTTTTGTTGATAACTTAAGGGTGTTATCACCCAAGATTCTACCAACTAGGGAGTTACTCAGGTTTATGATTGTGTCTCTTATAAAAAAACTGAGGAGAAGTAGTTCACTCAAGTCTTCAGGTATGGGATCTAACAAATCCCCTTTGAACTTCAAGACTGGGGTGGATCATTTTTGCCTCCACACAGGAGGAAAAGCTGTGATTGATGGGATTGGAATGAGCTTGGATCTGTGTGAATATGATCTTGAGCCAGCTAGGATGACACTACACCGTTTTGGGAACACTTCAGCTAGTAGCTTGTGGTATGTACTGGGGTATATGGAGGCCAAGAAGAGGCTCAAGAAGGGTGACAGAGTGCTGATGATAAGCTTTGGTGCTGGCTTTAAATGCAACAGCTGTTTGTGGGAGGTGATGAAGGATCTGGGGAACACAAATAATGTGTGGGACGATTGCATTGATGACTACCCACCAGAGTCCTTGGCCAACCCTTTCATGGAAAAGTACGGTTGGATCAACAATGTTGAGGATGCAAGCACCTTCAAATTTCCTGATTCTCTTAAGTAA 1410 0.4326 MEFLTLLYGVTILYLCFLIWKFFDQRRDQECYILDYQLYKPSDERKLGTECCGKIIGRNTHLGLNEYKFLLKAVVSSGIGEETYAPSNVIEGREANPTLMDGITEMEEFFYDSIAKLLTRSGISPSQIDVLVVNVSMFAAIPSLTSRIINHYKMRQDIKAYNLTGMGCSASLISLDIIKNIFKSQKNKCALLVTSESLSPNWYAGNDRSMILANCLFRTGGCVILLTNNRSLKHRAIMKLKCLVRTHHGAKEDSYSSCYQKEDEQGRLGFYLAKNLPKAATRAFVDNLRVLSPKILPTRELLRFMIVSLIKKLRRSSSLKSSGMGSNKSPLNFKTGVDHFCLHTGGKAVIDGIGMSLDLCEYDLEPARMTLHRFGNTSASSLWYVLGYMEAKKRLKKGDRVLMISFGAGFKCNSCLWEVMKDLGNTNNVWDDCIDDYPPESLANPFMEKYGWINNVEDASTFKFPDSLK* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2257 469 SUPERFAMILY Thiolase-like 63 420 IPR016039 GO:0016746
Apr2g2257 469 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 337 418 IPR013747 -
Apr2g2257 469 PIRSF Very_long_ch_3-ktacl-CoA_syn 1 452 IPR012392 GO:0006633|GO:0016020|GO:0016747
Apr2g2257 469 CDD CHS_like 13 417 - -
Apr2g2257 469 Gene3D - 68 419 IPR016039 GO:0016746
Apr2g2257 469 PANTHER 3-KETOACYL-COA SYNTHASE 1 459 - -
Apr2g2257 469 Pfam FAE1/Type III polyketide synthase-like protein 25 312 IPR013601 GO:0006633|GO:0016020|GO:0016747
Apr2g2257 469 PANTHER 3-KETOACYL-COA SYNTHASE 1 459 IPR012392 GO:0006633|GO:0016020|GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2257 Apr-Chr2 27687393 27688820 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2257 14 468 Acyl Lipid Metabolism Gene Families AT1G07720 68.750 0.0 664
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2257 K15397 - gmx:100790992 837.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2257 2 27687393 27688820 Apr2g2257 2 27687393 27688820 ECH
Apr2g2257 2 27687393 27688820 Apr3g1430 3 28910103 28911974 ECH
Apr2g2257 2 27687393 27688820 Apr3g1430 3 28910103 28911974 PCT