Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1428 ATGTTGGTGAATCCAATTCCAATGGACACACCAACCGTGCAGCCACAAGGTGCTACAGCAAGCACACCAAGGAAGAAAATGACCAAACAATTAACAGGGAAGCGTGATGATACACCTCTACACTCTGCAGCCAGAGCTGGAAATGTGGCTGTTTTGAAAGACACTCTTGGTGGTGCTGAAGAGGCTGAACTGCGTGCCCTGTTGACAAAGCAGAACCATGCTGGAGAAACAGCACTTTATGTTGCTGCTGAATATGGTTATGTTGATATGGTTAAGGAGATGATTCAATATTATGATCTTGCTGATGCTGGAATTAAAGCAAGGAATGGTTTTGATGCACTCCACATTGCTGCCAAACAAGGGGATTTGGATGTTGTGAAGATCCTAATGGAGGCTCATCCTGAATTGTCAATGACTGTGGATCCATGCAACACCACAGCCTTGCACACTGCTGCAACACAAGGGCATACTGAGACAGTGAAGTTTCTATTAGAGGCAGGTAGTGGCCTTGTAACCATTGCTAGAAGCAACGGGAAAACAGCTTTGCATTCTGCTGCCAGAAATGGACATTTGGAAGTTGTGAAAGCGCTTCTGGAGAAGGAGCCTGCGGTTGCAACAAGGACTGATAAGAAGGGTCAGACAGCACTTCACATGGCGGTGAAGGGACAGAGTCTTGAGGTGGTAGAGGTGTTGATAAAAGCTGATCCCTCTTTGTTAAACATGGTTGATAATAAGGGTAACACAGCATTGCATATAGCAACCAGGAAGGGCAGAGCTCAGATTGTCAAGTTGCTTCTTGGACATACAGAAACAGATGCCATGGCAGTTAATAGGTCTGGTGAAACAGCATTAGACACTGCTGAGAAAACTGGGAACTCTAATGTTAGAGATATTTTGGTGGAACATGGTGTTCAAAGTGCCAAAGCCATAAAGGCTCAGCCAGCAACAGCTGCACGTGAATTGAAACAAACAGTTAGTGACATAAAGCATGAAGTACATTACCAATTGGAACACACACGCCAAACAAGAAAAAGTGTTCAAGGCATTGCCAAACGTATAAACAAAATGCATGCTGAAGGACTCAACAATGCAATAAACTCCACAACTGTGGTAGCAGTACTAATTGCCACAGTTGCCTTTGCTGCTATTTTCACAGTCCCTGGCCAATATGCTGATGATCCAAAAGACATTCCTAAAGGGATGACCCTTGGTGAAGCAAACATAGCTCCACAAGCTGCATTTCTCATTTTCTTTGTCTTTGATTCCATTGCCCTCTTCATTTCACTCGCGGTTGTCGTGGTGCAAACCTCAGTTGTGATCATAGAAAGCAAAGCAAAGAAGCAGATGATGGCTATCATTAACAAGCTAATGTGGTTGGCTTGTGTGCTTATTTCTGTGGCCTTCTTGGCTTTGTCTTTTGTTGTGGTAGGGAAGGATCAAAAGTGGCTAGCAATTGGAGTAACCATCATAGGAACCACTATAATGGCTACAACATTGGGTACCATGTGCTATTGGGTCATTAGGCACCGAATTGAGGCTTCCAATTTGAGGAGCATTCGGAAATCTTCCATGGGAAGCAGGTCAAGGTCTTTTTCAGTGTCTGTTATGTCAGATTCTGAGCTACTAAACAATGAGTTTAAGAAAATGTATGCCATTTAG 1659 0.4376 MLVNPIPMDTPTVQPQGATASTPRKKMTKQLTGKRDDTPLHSAARAGNVAVLKDTLGGAEEAELRALLTKQNHAGETALYVAAEYGYVDMVKEMIQYYDLADAGIKARNGFDALHIAAKQGDLDVVKILMEAHPELSMTVDPCNTTALHTAATQGHTETVKFLLEAGSGLVTIARSNGKTALHSAARNGHLEVVKALLEKEPAVATRTDKKGQTALHMAVKGQSLEVVEVLIKADPSLLNMVDNKGNTALHIATRKGRAQIVKLLLGHTETDAMAVNRSGETALDTAEKTGNSNVRDILVEHGVQSAKAIKAQPATAARELKQTVSDIKHEVHYQLEHTRQTRKSVQGIAKRINKMHAEGLNNAINSTTVVAVLIATVAFAAIFTVPGQYADDPKDIPKGMTLGEANIAPQAAFLIFFVFDSIALFISLAVVVVQTSVVIIESKAKKQMMAIINKLMWLACVLISVAFLALSFVVVGKDQKWLAIGVTIIGTTIMATTLGTMCYWVIRHRIEASNLRSIRKSSMGSRSRSFSVSVMSDSELLNNEFKKMYAI* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1428 552 Gene3D - 239 324 IPR036770 -
Apr3g1428 552 ProSiteProfiles Ankyrin repeat profile. 245 266 IPR002110 GO:0005515
Apr3g1428 552 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 14 552 - -
Apr3g1428 552 Pfam Ankyrin repeats (3 copies) 177 236 IPR002110 GO:0005515
Apr3g1428 552 Pfam Ankyrin repeats (3 copies) 27 97 IPR002110 GO:0005515
Apr3g1428 552 Pfam Ankyrin repeats (3 copies) 101 167 IPR002110 GO:0005515
Apr3g1428 552 Pfam Ankyrin repeats (3 copies) 240 304 IPR002110 GO:0005515
Apr3g1428 552 ProSiteProfiles Ankyrin repeat region circular profile. 143 168 - -
Apr3g1428 552 MobiDBLite consensus disorder prediction 1 42 - -
Apr3g1428 552 ProSiteProfiles Ankyrin repeat region circular profile. 245 266 - -
Apr3g1428 552 SMART ANK_2a 35 64 IPR002110 GO:0005515
Apr3g1428 552 SMART ANK_2a 74 103 IPR002110 GO:0005515
Apr3g1428 552 SMART ANK_2a 245 273 IPR002110 GO:0005515
Apr3g1428 552 SMART ANK_2a 143 173 IPR002110 GO:0005515
Apr3g1428 552 SMART ANK_2a 211 240 IPR002110 GO:0005515
Apr3g1428 552 SMART ANK_2a 279 309 IPR002110 GO:0005515
Apr3g1428 552 SMART ANK_2a 177 206 IPR002110 GO:0005515
Apr3g1428 552 SMART ANK_2a 109 138 IPR002110 GO:0005515
Apr3g1428 552 PANTHER ANKYRIN REPEAT PLANT PROTEIN 14 552 - -
Apr3g1428 552 ProSiteProfiles Ankyrin repeat region circular profile. 211 233 - -
Apr3g1428 552 Gene3D - 18 171 IPR036770 -
Apr3g1428 552 Gene3D - 172 238 IPR036770 -
Apr3g1428 552 MobiDBLite consensus disorder prediction 9 27 - -
Apr3g1428 552 ProSiteProfiles Ankyrin repeat profile. 109 141 IPR002110 GO:0005515
Apr3g1428 552 ProSiteProfiles Ankyrin repeat region circular profile. 177 200 - -
Apr3g1428 552 Pfam Domain of unknown function 359 475 IPR026961 -
Apr3g1428 552 ProSiteProfiles Ankyrin repeat profile. 143 175 IPR002110 GO:0005515
Apr3g1428 552 ProSiteProfiles Ankyrin repeat profile. 177 209 IPR002110 GO:0005515
Apr3g1428 552 SUPERFAMILY Ankyrin repeat 39 304 IPR036770 -
Apr3g1428 552 ProSiteProfiles Ankyrin repeat region circular profile. 109 131 - -
Apr3g1428 552 ProSiteProfiles Ankyrin repeat profile. 211 233 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1428 Apr-Chr3 28884804 28888544 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1428 18 552 Miscellaneous Gene Families AT1G07710 73.832 0.0 749
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1428 - - gmx:100808971 902.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1428 3 28884804 28888544 Apr3g1428 3 28884804 28888544 ECH
Apr2g2256 2 27673992 27676873 Apr3g1428 3 28884804 28888544 ECH