Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2256 ATGGTGACACCATCTGTGCAGCCAGTAAACACCCCAAGGAAGAAAATGACGAAACAATTGACAGGAAAAAGGGATGATACCCCTCTGCATTCTGCAGCAAGAGGAGGGAATGTGGATGTGATGAAGGAAATCCTTGTGGGAACTGATGAGGCTCAATTGCATGAATTATTAGCAAAACAGAATCAAGATGGAGAAACAGCCCTTTATATTGCTGCTGAATATGGTTACATTGATGTGGTGAGGGAGATGATTCAATACTATGATCTTGCTGATGCTGGAATTAAAGCTAGAAATGGTTTTGATGCATTGCACATAGCTGCCAAACAAGGGGATTTAGATATACTGAAGATACTTATGGAGGCTCATCCTGAATTGTCAATGACTGTGGATCCATCCAACACCACAGCTTTGCACACTGCTGCAACACAAGGGCACACTGAGATTGTGAAATTCCTATTGGAAGCAGGAAGTAGCCTTGCAACCATTGCTAGAAGTAATGGGAAAACGGCTCTTCATTCTGCTGCCAGAAATGGACATTTGGAGGTTGTGAACGCCCTTCTTGAGAAGGAACCTGGGGTTACAACAAGGACTGATAAGAAGGGTCAGACAGCACTTCACATGGCAGTGAAAGGACAGAATCTTGAGGTGGTGATGGCATTGATAAAAGTAAATCCTTCATCTATAAACATGGTTGATAATAAGGGAAACACTGCGTTGCATATAACAACCAGGAAGGGTAGGACTCAGATTGTGAAGTTGCTTTTAGGACAGAAGGAAACGGATACAAAAGCTGTGAATAGATGTGGTGAAACTGCAGTAGACACTGCTGAGAAAACGGGGAACCATGATGTGAAAGCCATTCTGCTGCAACATGGTGTTCAGAGTGCCAAGATCATAAAACCACAAGGCACAACAACAGCTACAGCACGTGAGTTGAAACAAACTGTAAGTGATATAAAGCATGAGGTTCATCACCAGTTGGAGCACACTCGCCAAACTAGAAAACGTGTTCAAGGAATTGCCAAACGTATCAACAAAATGCATTCTGAAGGCCTCAACAATGCAATAAACTCCACAACTGTGGTGGCAGTCCTAATTGCCACTGTTGCCTTTGCCGCTATTTTCACTGTCCCTGGTCAATTTGTTGATGACCCAAACAATATTCCTCCAGGGATGTCCCTTGGTGAAGCAAATATAGCCCCACAAGCTCCATTCATCATTTTCTTTGTCTTCGATTCCATTGCCCTCTTCATTTCTTTAGCAGTTGTGGTAGTGCAAACCTCGGTTGTGGTTATAGAAAGCAAAGCAAAGAAGCAGATGATGGCCATAATAAACAAGCTAATGTGGCTAGCTTGTGTTCTTATTTCTGTGGCCTTCTTGGCATTGTCATTTGTAGTGGTGGGAAAGGAGGAGAAGTGGCTGGCCATTGGAGTGACTATTATAGGGACAACCATAATGGTCACAACCTTGGGCACTATGTGTTACTGGGTTGTTAGGCATCGCATTGAGGCCTCAAATTTGAGGAACATTCGGAAATCTTCATTGGCAAGCAGGTCAAAGTCTTTTTCAGTGTCGGCCTTTTCAGATTCTGAGCTACTAAACAATGAAAGAATGTATGCTATTTAA 1626 0.4299 MVTPSVQPVNTPRKKMTKQLTGKRDDTPLHSAARGGNVDVMKEILVGTDEAQLHELLAKQNQDGETALYIAAEYGYIDVVREMIQYYDLADAGIKARNGFDALHIAAKQGDLDILKILMEAHPELSMTVDPSNTTALHTAATQGHTEIVKFLLEAGSSLATIARSNGKTALHSAARNGHLEVVNALLEKEPGVTTRTDKKGQTALHMAVKGQNLEVVMALIKVNPSSINMVDNKGNTALHITTRKGRTQIVKLLLGQKETDTKAVNRCGETAVDTAEKTGNHDVKAILLQHGVQSAKIIKPQGTTTATARELKQTVSDIKHEVHHQLEHTRQTRKRVQGIAKRINKMHSEGLNNAINSTTVVAVLIATVAFAAIFTVPGQFVDDPNNIPPGMSLGEANIAPQAPFIIFFVFDSIALFISLAVVVVQTSVVVIESKAKKQMMAIINKLMWLACVLISVAFLALSFVVVGKEEKWLAIGVTIIGTTIMVTTLGTMCYWVVRHRIEASNLRNIRKSSLASRSKSFSVSAFSDSELLNNERMYAI* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2256 541 Gene3D - 9 161 IPR036770 -
Apr2g2256 541 ProSiteProfiles Ankyrin repeat region circular profile. 98 120 - -
Apr2g2256 541 ProSiteProfiles Ankyrin repeat profile. 98 130 IPR002110 GO:0005515
Apr2g2256 541 Pfam Ankyrin repeats (3 copies) 90 159 IPR002110 GO:0005515
Apr2g2256 541 Pfam Ankyrin repeats (3 copies) 17 86 IPR002110 GO:0005515
Apr2g2256 541 Pfam Ankyrin repeats (3 copies) 166 230 IPR002110 GO:0005515
Apr2g2256 541 ProSiteProfiles Ankyrin repeat region circular profile. 132 159 - -
Apr2g2256 541 ProSiteProfiles Ankyrin repeat region circular profile. 200 222 - -
Apr2g2256 541 Pfam Ankyrin repeat 235 256 IPR002110 GO:0005515
Apr2g2256 541 MobiDBLite consensus disorder prediction 1 16 - -
Apr2g2256 541 ProSiteProfiles Ankyrin repeat region circular profile. 63 85 - -
Apr2g2256 541 MobiDBLite consensus disorder prediction 1 33 - -
Apr2g2256 541 ProSiteProfiles Ankyrin repeat profile. 200 233 IPR002110 GO:0005515
Apr2g2256 541 SMART ANK_2a 268 298 IPR002110 GO:0005515
Apr2g2256 541 SMART ANK_2a 63 92 IPR002110 GO:0005515
Apr2g2256 541 SMART ANK_2a 166 195 IPR002110 GO:0005515
Apr2g2256 541 SMART ANK_2a 200 230 IPR002110 GO:0005515
Apr2g2256 541 SMART ANK_2a 132 161 IPR002110 GO:0005515
Apr2g2256 541 SMART ANK_2a 234 264 IPR002110 GO:0005515
Apr2g2256 541 SMART ANK_2a 98 127 IPR002110 GO:0005515
Apr2g2256 541 SMART ANK_2a 24 53 IPR002110 GO:0005515
Apr2g2256 541 ProSiteProfiles Ankyrin repeat profile. 132 164 IPR002110 GO:0005515
Apr2g2256 541 ProSiteProfiles Ankyrin repeat profile. 63 85 IPR002110 GO:0005515
Apr2g2256 541 PANTHER ANKYRIN REPEAT PLANT PROTEIN 6 541 - -
Apr2g2256 541 Gene3D - 162 345 IPR036770 -
Apr2g2256 541 ProSiteProfiles Ankyrin repeat profile. 234 255 IPR002110 GO:0005515
Apr2g2256 541 Pfam Domain of unknown function 350 466 IPR026961 -
Apr2g2256 541 ProSiteProfiles Ankyrin repeat region circular profile. 234 255 - -
Apr2g2256 541 ProSiteProfiles Ankyrin repeat profile. 166 198 IPR002110 GO:0005515
Apr2g2256 541 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 6 541 - -
Apr2g2256 541 SUPERFAMILY Ankyrin repeat 28 293 IPR036770 -
Apr2g2256 541 ProSiteProfiles Ankyrin repeat region circular profile. 166 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2256 Apr-Chr2 27673992 27676873 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2256 12 541 Miscellaneous Gene Families AT1G07710 75.188 0.0 769
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2256 - - gmx:100779230 897.501
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2256 2 27673992 27676873 Apr2g2256 2 27673992 27676873 ECH
Apr2g2256 2 27673992 27676873 Apr3g1428 3 28884804 28888544 ECH