Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1422 ATGGAATTGCCCACTTCCAAGCTTTGGTTCATCATTTTTACTCTTAAATATTTCTTCTTTATCTTTTCATTCCTATCTTCAACCCACGTAGAAGCAACACACTCTGCAGGCTCAAACTTGTTTCGAGAATACATTGGAGCCGAGTTTAACAGCGTCAAATTTTCAGATGTCCCTATTAATCCAAGTGTCCAATTTCACTTCCTTCTCTCATTTGCTATTGACTATGACACATCATCTTCTCCTTCTCCCACCAATGGAAAGTTTAACATCTTTTGGGACACCGACAACCTTAGTCCCACCCAAGTTTCTTCCATCAAGAGTAAGAATTCAAACGTCAAGGTAGCCCTTAGTCTTGGAGGAGATAGTGTTGGAGGTGGTTCTGCTTACTTTGATCCATCTTCAATTGATTCATGGGTTTCCAATGCAGTTTCTTCACTCACAAACATAATCAAAGAGTACAACTTAGATGGAATTGACATTGACTATGAGCATTTCAAGGCTGACCCTAATACCTTTGCTGAGTGTGTAGGGAAGCTAATCCAAACTCTTAAAACCAATGGAGTCATCACTTTTGCTTCTATTGCTCCATTTGATGATGATCAAGTTCAAAGTCACTACTTGGCCTTATGGAAAAGTTATGGGCACCTCATAGATTATGTTAACTTCCAATTTTATGCATATGATAAAGGTACCAGTGTCTCTCAGTTTATTGATTATTTCAACACACAAAGCTCAAATTATAATGGTGGGAAGGTTTTGGTGAGCTTCATTAGTGATGGGAGTGGTGGGTTGGCCCCAGATGATGGATTCTTCACAGCATGCCATATGCTGAAGAGTCAACAAAAACTCCATGGTATCTTTGTGTGGTCTGCTGATGACTCCATGGCAAATAGTTTCCGCTACGAGAAGCAATCACAAGCACTCTTGGCTATCCCTCGTAATTAA 945 0.3989 MELPTSKLWFIIFTLKYFFFIFSFLSSTHVEATHSAGSNLFREYIGAEFNSVKFSDVPINPSVQFHFLLSFAIDYDTSSSPSPTNGKFNIFWDTDNLSPTQVSSIKSKNSNVKVALSLGGDSVGGGSAYFDPSSIDSWVSNAVSSLTNIIKEYNLDGIDIDYEHFKADPNTFAECVGKLIQTLKTNGVITFASIAPFDDDQVQSHYLALWKSYGHLIDYVNFQFYAYDKGTSVSQFIDYFNTQSSNYNGGKVLVSFISDGSGGLAPDDGFFTACHMLKSQQKLHGIFVWSADDSMANSFRYEKQSQALLAIPRN* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1422 314 Gene3D Glycosidases 38 312 - -
Apr3g1422 314 PANTHER 2, PUTATIVE, EXPRESSED-RELATED 19 311 - -
Apr3g1422 314 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 155 163 IPR001579 GO:0004553|GO:0005975
Apr3g1422 314 PANTHER CHITINASE 2-LIKE 19 311 - -
Apr3g1422 314 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 39 306 IPR001223 GO:0005975
Apr3g1422 314 PRINTS 2-S globulin family signature 38 51 IPR000677 -
Apr3g1422 314 PRINTS 2-S globulin family signature 85 100 IPR000677 -
Apr3g1422 314 PRINTS 2-S globulin family signature 102 120 IPR000677 -
Apr3g1422 314 PRINTS 2-S globulin family signature 272 291 IPR000677 -
Apr3g1422 314 Pfam Glycosyl hydrolases family 18 86 229 IPR001223 GO:0005975
Apr3g1422 314 CDD GH18_narbonin 40 294 - -
Apr3g1422 314 SUPERFAMILY (Trans)glycosidases 38 304 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1422 Apr-Chr3 28811951 28812895 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1422 - - aprc:113859773 631.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1422 3 28811951 28812895 Apr3g1422 3 28811951 28812895 ECH
Apr2g2249 2 27621211 27622123 Apr3g1422 3 28811951 28812895 PCT