Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1393 ATGGGAAACATAGCTACCCTTTTGCTCTTGCTCTTTGTTTTTTGCCATGGAGTGGCCATAGCAGAAAGTCCTTCAAGTTCATCAACCAAATTGTTCTTGATGCAAAACTCCAAGAGAGTGGTTAAGACTGATGCAGGGGAAATGCGAGTTATGAAAAGCTATGGTGGTAGGATTTTGGATAGGCACATGCAAATTGGTTTCATCTCTATGGAACCAATGTCCTTGTTCATTCCTCAGTACCTTGACTCCAATTTGATCATCTTCATCCGAAGAGGGGAAGCAAAATTGGGATTCATATATGATGATAAACTAGCGGAAAGGAGATTGAAGACAGGAGATGTGTATATAATTCCAGCAGGTTCAGCATTCTATTTGGTGAATTTAGGGGCGGGTCAGAGACTTCACATCATTTGCAGCATTAACCCCTCTTCAAACTTAGGAGTAGATACCTTTCAGTCCTTCTATATTGGCGGAGGAGCCAATGCACCCTCAGTGCTTTATGGATTCGAGTCTGTGATCCTTGAAGCTGCATTTAATGAATCAAGAACCGTGCTAAGGAAAATCTTCACCAAGGAACTAGATGGGCCAATTGTGTACGTGACTGATACACATGCACCTAGATTATGGACTAAATTCCTTCAACTGAAAAAAGAAGACAAAGTGCAACACCTGAAGAAAATTGTGCAAGACCAAGAAGAAGAAGAAGAGGAGGAAGAGAAGGAAACAAGTTGGTCATGGAGGAAGTTCATGGAAACTATACTTGGTAATGTGAATGAGAAGATAGAGAACAAACACACTGCTGGTTCTCCTGACTCTTACAACCTCCATGACAAAAAACCTGATTTCAGAAATGCTTATGGTTGGAGCAAGACACTTGATGGAGCCGAGTATCCTCCACTCAGAAAAGCTGACATTGGCATTTTTCACGTCAACCTCACCGCGGGATCCATGATGGCACCCCATTTGAATCCAAGAGCAACAGAGTATGGCATAGTGCTGAGGGGTTATGGTAGAATTCAAATACTATTTCCAAATGGAAGCAACGCGATGAACACCGAAATCAAAGTAGGGGACGTGTTTGTTGTACCAAGATACTTCCCCTTCTGCCAAATAGCATCAAGGAATGGACCCTTAGAGTTCTTTGGGTTCTCAACCTCTGCCAGGAAGAACAAGCCACAGTTTCTAGCTGGAGCTGTGTCCCTTGTTACGACCATGATGGGGCCTGAGCTCGCAGCTGCTTTCGGGGTGAGCGAGGACACGATGCGGCGCACTGTCGACGCTCAACACGAGGCTGTAATACTGCCATCAACATGGGCTGCACCACCGGAAGATCCAGGGAAAATGGAAGAAGAGAAGGTACACATGCAGCCAAAGGCTATTAGAAGCTTTGCTAAGGATATAGTTATGGATGTTTTTTAA 1419 0.4405 MGNIATLLLLLFVFCHGVAIAESPSSSSTKLFLMQNSKRVVKTDAGEMRVMKSYGGRILDRHMQIGFISMEPMSLFIPQYLDSNLIIFIRRGEAKLGFIYDDKLAERRLKTGDVYIIPAGSAFYLVNLGAGQRLHIICSINPSSNLGVDTFQSFYIGGGANAPSVLYGFESVILEAAFNESRTVLRKIFTKELDGPIVYVTDTHAPRLWTKFLQLKKEDKVQHLKKIVQDQEEEEEEEEKETSWSWRKFMETILGNVNEKIENKHTAGSPDSYNLHDKKPDFRNAYGWSKTLDGAEYPPLRKADIGIFHVNLTAGSMMAPHLNPRATEYGIVLRGYGRIQILFPNGSNAMNTEIKVGDVFVVPRYFPFCQIASRNGPLEFFGFSTSARKNKPQFLAGAVSLVTTMMGPELAAAFGVSEDTMRRTVDAQHEAVILPSTWAAPPEDPGKMEEEKVHMQPKAIRSFAKDIVMDVF* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1393 472 CDD cupin_7S_vicilin-like_C 280 431 - -
Apr3g1393 472 PANTHER OS03G0336100 PROTEIN 1 444 - -
Apr3g1393 472 PANTHER OS03G0336100 PROTEIN-RELATED 1 444 - -
Apr3g1393 472 Pfam Cupin 37 138 IPR006045 -
Apr3g1393 472 Pfam Cupin 273 420 IPR006045 -
Apr3g1393 472 Gene3D Jelly Rolls 266 437 IPR014710 -
Apr3g1393 472 CDD cupin_7S_vicilin-like_N 40 201 - -
Apr3g1393 472 SMART Cupin_1_3 273 422 IPR006045 -
Apr3g1393 472 SMART Cupin_1_3 32 186 IPR006045 -
Apr3g1393 472 SUPERFAMILY RmlC-like cupins 35 431 IPR011051 -
Apr3g1393 472 Coils Coil 221 241 - -
Apr3g1393 472 Gene3D Jelly Rolls 22 214 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1393 Apr-Chr3 28382630 28385362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1393 12 443 Miscellaneous Gene Families AT2G18540 28.798 1.46e-42 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1393 - - gmx:547942 694.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1393 3 28382630 28385362 Apr3g1393 3 28382630 28385362 ECH
Apr2g2229 2 27395508 27397764 Apr3g1393 3 28382630 28385362 PCT