Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1365 ATGCTAAGTCGCAGACGACTCGTCGTTTCGCTCTCGCTCGCCACTCTTCTATTCCTTTCCTCCTCCTCTCTCACTCTCTCCAAGAAAGCCCCTCAAAACGACGACGACGACGAAGATCTCAGCTTCCTCGAGGAACTCGATGACACCGCCACTTCACACCACAATTTCCCAGATCCCGACCACTTCCACGACGGAGAAGGCGACGACGATGACGGAGACTTCGACGACTTCTCCAGCTTCGACCCCTCGGTCGAGGAGGCGTACAAGGAGCCCGCGGTGGACGACAAAGACGTCGTCGTATTGAAGGAGCGCAACTTCACCACCGTAATCGAAAACAACGAATTCGTGATGGTGGAATTCTACGCCCCCTGGTGCGGTCACTGCCAGGCCTTGGCGCCGGAGTACGCCGCCGCCGCCACCGAATTGAAGTCCGACGGCGTCGTTTTGGCCAAGGTGGATGCCACTGTGGAGAGCGAATTGGCCGGCGAGTACGACGTTCAGGGTTTCCCCACTGTCTTCTTCTTCACCGATGGGGTTCACAAGCCTTACACTGGCCAAAGAACCAAAGATGCTATAGTGACATGGGTTAGAAAGAAGATAGGACCTGGTGTGTACAACATAACTACGTTGGATGATGCTGAACGCATTTTGACCTCTGAAAGCAAAGTTGTTTTGGGCTTCCTTGACTCTCTAGTCGGTGCTGAGAGTGGCGAGCTAGCTGCAGCATCAAAACTTGAGGACGACGTCAATTTTTATCAAACTACTGTACCTGATGTGGCAAAGCTTTTCCATATTGATCCAAGTGTTAAACGCCCTGCATTGGTCTTGCTCAAGAAAGAGGAGGAGAAATTGAACTATTTTGATGGTCAATTTGTAAAAGCTGAAATAGCCAGCTTTGTATCCTCTAACAAACTTCCTTTGGTTACAACTTTTACAAGAGAAAGTGCCCCGTCAATCTTTGAAAGTCAAATCAAGAAACAGTTGTTGCTGTTTGTGAGCTCAAATGACACAGAGAAGTTAGTCCCTGTATTTGAAGAAGCAGCAAAATTTTTCAAGGGGAAGCTGGTCTTTGTTCATGTGGCAATGGATAATGAAGATGTTGGAAAGCCTGTTGCAGATTATTTTGGTATCACCGGAAATGCTCCCAAAGTACTTGCATTCACCGGAAATGATGATGGAAGAAAATTTTTGCTTGATGGAGAGGTGACGGTTGACAACATTAAGGCATTTGGGAACAATTTCCTTGAAGACAAGCTAAAACCTTTCCTCAAGTCAGATCCAGTTCCTGAAAGTAATGACGGTGATGTGAAAATAGTTGTGGGGGATAACTTTGATGAAATTGTCTTGGACGAGTCGAAGGATGTTCTGCTTGAGATTTATGCTCCCTGGTGTGGCCACTGCCAAGCCCTAGAACCAACATACAACAAGCTTGCAAAACATCTTCGTGGCATTGAGTCTATTATTATAGCCAAGATGGACGGAACAACAAATGAGCATCCCAGGGCAAAGGCTGATGGATTCCCCACTATTCTCTTCTTCCCAGCAGGAAACAAGAGTTCTGACCCCATAACTGCTGATGTGGATCGTACAGTGGTAGCCTTCTATAAGTTCCTCAGGAAACATGCATCAATCCCGTTCCAGCTCCAGAAACCAACCTCAACTAAATCTGGGAGCGAGAGTTCTGATGTCAACAAGGAGAGCCAGAGTTCTGATGTCAAGGAGACCCATCGTAGCAGCACCGAATTGAAGGACGAATTATGA 1761 0.4747 MLSRRRLVVSLSLATLLFLSSSSLTLSKKAPQNDDDDEDLSFLEELDDTATSHHNFPDPDHFHDGEGDDDDGDFDDFSSFDPSVEEAYKEPAVDDKDVVVLKERNFTTVIENNEFVMVEFYAPWCGHCQALAPEYAAAATELKSDGVVLAKVDATVESELAGEYDVQGFPTVFFFTDGVHKPYTGQRTKDAIVTWVRKKIGPGVYNITTLDDAERILTSESKVVLGFLDSLVGAESGELAAASKLEDDVNFYQTTVPDVAKLFHIDPSVKRPALVLLKKEEEKLNYFDGQFVKAEIASFVSSNKLPLVTTFTRESAPSIFESQIKKQLLLFVSSNDTEKLVPVFEEAAKFFKGKLVFVHVAMDNEDVGKPVADYFGITGNAPKVLAFTGNDDGRKFLLDGEVTVDNIKAFGNNFLEDKLKPFLKSDPVPESNDGDVKIVVGDNFDEIVLDESKDVLLEIYAPWCGHCQALEPTYNKLAKHLRGIESIIIAKMDGTTNEHPRAKADGFPTILFFPAGNKSSDPITADVDRTVVAFYKFLRKHASIPFQLQKPTSTKSGSESSDVNKESQSSDVKETHRSSTELKDEL* 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1365 586 Pfam Thioredoxin-like domain 240 412 - -
Apr3g1365 586 TIGRFAM ER_PDI_fam: protein disulfide isomerase 96 569 IPR005792 GO:0003756
Apr3g1365 586 TIGRFAM pdi_dom: protein disulfide-isomerase domain 102 199 IPR005788 GO:0003756
Apr3g1365 586 MobiDBLite consensus disorder prediction 46 63 - -
Apr3g1365 586 Gene3D Glutaredoxin 305 429 - -
Apr3g1365 586 ProSiteProfiles Thioredoxin domain profile. 422 543 IPR013766 -
Apr3g1365 586 MobiDBLite consensus disorder prediction 566 586 - -
Apr3g1365 586 ProSitePatterns Thioredoxin family active site. 456 474 IPR017937 -
Apr3g1365 586 MobiDBLite consensus disorder prediction 548 586 - -
Apr3g1365 586 CDD PDI_b'_family 315 415 - -
Apr3g1365 586 SUPERFAMILY Thioredoxin-like 431 542 IPR036249 -
Apr3g1365 586 PANTHER PROTEIN DISULFIDE-ISOMERASE 2 569 - -
Apr3g1365 586 MobiDBLite consensus disorder prediction 548 565 - -
Apr3g1365 586 CDD PDI_a_PDI_a'_C 436 538 - -
Apr3g1365 586 SUPERFAMILY Thioredoxin-like 303 433 IPR036249 -
Apr3g1365 586 CDD PDI_b_family 204 303 - -
Apr3g1365 586 PRINTS Thioredoxin family signature 116 124 - -
Apr3g1365 586 PRINTS Thioredoxin family signature 124 133 - -
Apr3g1365 586 PRINTS Thioredoxin family signature 165 176 - -
Apr3g1365 586 Gene3D Glutaredoxin 201 304 - -
Apr3g1365 586 Gene3D Glutaredoxin 430 544 - -
Apr3g1365 586 Gene3D Glutaredoxin 85 200 - -
Apr3g1365 586 PANTHER PROTEIN DISULFIDE ISOMERASE 2 569 - -
Apr3g1365 586 Pfam Thioredoxin 98 197 IPR013766 -
Apr3g1365 586 Pfam Thioredoxin 436 522 IPR013766 -
Apr3g1365 586 ProSitePatterns Thioredoxin family active site. 117 135 IPR017937 -
Apr3g1365 586 ProSiteProfiles Thioredoxin domain profile. 79 201 IPR013766 -
Apr3g1365 586 SUPERFAMILY Thioredoxin-like 204 315 IPR036249 -
Apr3g1365 586 SUPERFAMILY Thioredoxin-like 92 201 IPR036249 -
Apr3g1365 586 MobiDBLite consensus disorder prediction 27 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1365 Apr-Chr3 28149967 28154473 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1365 K09580 - gmx:100790223 881.708
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1365 3 28149967 28154473 Apr3g1365 3 28149967 28154473 ECH
Apr2g2208 2 27237434 27241483 Apr3g1365 3 28149967 28154473 ECH
Apr2g2208 2 27237434 27241483 Apr3g1365 3 28149967 28154473 PCT