Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1350 ATGGTAGAACAAGCACAGTGTAAGAGAAAGGAGGTGATGGAGGGTGAAGAAGCTGAAACTGAGATGAAAGTTAAACAATCAAGGTTCAAGAGGATTTGTGTGTTCTGTGGAAGCAGTCCTGGGAACAAGAGTAGTTATAAGGATGCTGCTATTGAGCTTGGGAAGGAGCTGGTGTCAAGAAATATTGATCTGGTTTATGGAGGAGGCAGCATTGGTTTGATGGGCTTGGTTTCCCAGGCAGTGTATGATGGAGGTCGCCATGTAATTGGAGTTATTCCCAAGACACTGATGCCAAGAGAGATTACTGGGGAAACAGTGGGGGAAGTGAAGGCAGTAGCAGACATGCACCAAAGAAAAGCAGAAATGGCTAAGCACTCTGATGCCTTTATTGCCTTACCCGGTGGCTATGGGACACTTGAGGAGCTTCTTGAGGTGATAACTTGGGCTCAGCTTGGAATCCATGATAAACCGGTGGGGTTGCTGAATGTAGATGGATACTACAATTCCTTATTGTCATTCATTGACAAAGCTGTGGAGGAAGGCTTCATTAGCCCCAAAGCTCGCCATATAATTGTGTCTGCCCCATCAACAAAAGAGCTTGTCAAAAAGATGGAAGAATATTTTCCACAACATGAAAGAGTTGCATCTAAGCTAAGCTGGGAAACTGAGCAGCTAGATTACTCTTCAAATTGTGACATCTCAAGGTGA 708 0.4449 MVEQAQCKRKEVMEGEEAETEMKVKQSRFKRICVFCGSSPGNKSSYKDAAIELGKELVSRNIDLVYGGGSIGLMGLVSQAVYDGGRHVIGVIPKTLMPREITGETVGEVKAVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPKARHIIVSAPSTKELVKKMEEYFPQHERVASKLSWETEQLDYSSNCDISR* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1350 235 PANTHER LOG FAMILY PROTEIN YJL055W 19 235 - -
Apr3g1350 235 Pfam Possible lysine decarboxylase 74 204 IPR031100 -
Apr3g1350 235 PANTHER CYTOKININ RIBOSIDE 5'-MONOPHOSPHATE PHOSPHORIBOHYDROLASE LOG1 19 235 - -
Apr3g1350 235 SUPERFAMILY MCP/YpsA-like 28 207 - -
Apr3g1350 235 Gene3D - 18 206 - -
Apr3g1350 235 TIGRFAM TIGR00730: TIGR00730 family protein 30 207 IPR005269 GO:0009691|GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1350 Apr-Chr3 28019981 28025132 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1350 K22522 - gmx:100815735 423.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1350 3 28019981 28025132 Apr3g1350 3 28019981 28025132 ECH
Apr2g2193 2 27110302 27114057 Apr3g1350 3 28019981 28025132 ECH
Apr2g2193 2 27110302 27114057 Apr3g1350 3 28019981 28025132 PCT