Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1294 ATGGACAAGTTGTTCGTCGCTTTTCTCTTCTCCGTCGTGCTTCTGTCGTCGGCGGTTGGGTCTCCTGTGACTCTGACGCTGGAAAGAGCGTTCCCTTCTAATCATGGCGTGGAGTTGAGTCAGCTCAGAGCGAGGGACATCCTCAGACATCATAGAATGTTGCAGTCTACTAACTATGTTGTAGATTTCCCTGTTAAAGGAACCTTCGATCCCACACAAGTCGGGCTTTACTTTACAAAGGTGAAATTGGGTACTCCTCCAAGGGAATTTTATGTGCAGATTGACACTGGCAGTGATGTTCTCTGGGTTAGTTGTGGATCCTGCAGTGGTTGTCCCCAGACAAGTGGCCTCCCAATTCAACTCAATTACTTTGACCCTGGGAGTTCATCAACATCTTCATTGATCTCTTGTTCGGATCGAAGGTGCAGGAATGGAGTACAGTCATCAGATGCCAGTTGTTCCAGTCAGAGCAACCAGTGCACTTACACATTTCAGTATGGAGATGGTAGTGGAACATCAGGTTATTATGTGTCAGACTTGATGCATTTTGCCAGTATTTTTGAGGGTTCCTTGATGACCAATTCGTCGGCATCTGTAGTTTTTGGCTGTAGCAACCTGCAGAGTGGGGACTTGACAAAGTCTGATAGAGCAGTTGATGGGATATTTGGATTTGGGCAACAAGGCATGTCTGTCATCTCCCAACTCTCATCGCAAGGAATTGCTCCAAGAGTGTTCTCTCATTGCCTGAAAGGAGATAATAGTGGTGGGGGCATATTGGTTCTTGGCGAGATTGTGGAACCGGACATAATTTTTAGTCCACTTGTTCCATCACAGCCCCATTACAACTTAAATCTGCAGAGCATCTCTGTCAATGGCCAAATTTTGCAAATTGATCCTGCAGTTTTTTCTACATCAAATAACAGAGGTACCATTATTGATTCTGGAACAACTTTGGCATACCTTGCAGAAGAAGCCTACAACCCCTTTGTCAATGCGATTACAGTGGCTATTCCACAATCTGTACGCACTGTTCTTTCTAGGGGAAATCAGTGCTACTTAATAACCAGCTCCAGCAATGTCGACATTTTTCCACAAGTCAGTCTGAACTTTGCTGGAGGTTCATCTCTGGTTTTAAGGCCACAGGACTACCTTATACAGCAGAATTATATTGGTGAGGGATCAGTGTGGTGTATTGGCTTTCAGAAAATCCCGGGTCAAGGTGTAACAATTCTAGGAGACCTTGTATTAAAAGACAAAATTTTTGTCTATGATCTTGCTGGTCAACGCATTGGATGGGCTAACTATGACTGTTCATTGCCAGTTAATGTCTCTGCATCAACTGGTAGGGGCAGAAGTGAGTTTGTGGATGCTGGAGAGCTAAATGGAAGCACTTCTTTACGTTATGCAACTCACAATTTGCTAAAGACAGTGCTCCTTACTCTCTTAATAACACTAATATGTTGCTATGTATTTTTGTAG 1479 0.4388 MDKLFVAFLFSVVLLSSAVGSPVTLTLERAFPSNHGVELSQLRARDILRHHRMLQSTNYVVDFPVKGTFDPTQVGLYFTKVKLGTPPREFYVQIDTGSDVLWVSCGSCSGCPQTSGLPIQLNYFDPGSSSTSSLISCSDRRCRNGVQSSDASCSSQSNQCTYTFQYGDGSGTSGYYVSDLMHFASIFEGSLMTNSSASVVFGCSNLQSGDLTKSDRAVDGIFGFGQQGMSVISQLSSQGIAPRVFSHCLKGDNSGGGILVLGEIVEPDIIFSPLVPSQPHYNLNLQSISVNGQILQIDPAVFSTSNNRGTIIDSGTTLAYLAEEAYNPFVNAITVAIPQSVRTVLSRGNQCYLITSSSNVDIFPQVSLNFAGGSSLVLRPQDYLIQQNYIGEGSVWCIGFQKIPGQGVTILGDLVLKDKIFVYDLAGQRIGWANYDCSLPVNVSASTGRGRSEFVDAGELNGSTSLRYATHNLLKTVLLTLLITLICCYVFL* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1294 492 Pfam Xylanase inhibitor C-terminal 280 433 IPR032799 -
Apr3g1294 492 Pfam Xylanase inhibitor N-terminal 77 262 IPR032861 -
Apr3g1294 492 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 4 454 - -
Apr3g1294 492 ProSiteProfiles Peptidase family A1 domain profile. 77 433 IPR033121 -
Apr3g1294 492 SUPERFAMILY Acid proteases 73 439 IPR021109 -
Apr3g1294 492 CDD pepsin_A_like_plant 77 437 IPR034161 -
Apr3g1294 492 PRINTS Pepsin (A1) aspartic protease family signature 83 103 IPR001461 GO:0004190|GO:0006508
Apr3g1294 492 PRINTS Pepsin (A1) aspartic protease family signature 310 321 IPR001461 GO:0004190|GO:0006508
Apr3g1294 492 PRINTS Pepsin (A1) aspartic protease family signature 409 424 IPR001461 GO:0004190|GO:0006508
Apr3g1294 492 PANTHER ASPARTYL PROTEASES 4 454 IPR001461 GO:0004190|GO:0006508
Apr3g1294 492 Gene3D Acid Proteases 51 263 IPR021109 -
Apr3g1294 492 Gene3D Acid Proteases 264 442 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1294 Apr-Chr3 27417338 27422594 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1294 53 438 Miscellaneous Gene Families AT1G44130 27.723 4.26e-37 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1294 - K00924 gmx:100789004 831.247
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1294 3 27417338 27422594 Apr3g1294 3 27417338 27422594 ECH
Apr2g2148 2 26625543 26630377 Apr3g1294 3 27417338 27422594 PCT