Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2148 ATGGCCGCTGCGTTTGCCATCTTCGTGGCGTTGATCGCGGCGGCGGTGGCGGTGGGTTTTGGATCGCCGGCGACTCTGACGTTGGAGAGAGCGTTTCCGACGAATCATGGAGTGGAGTTGAGTCATCTGAGAGCTCGTGACATGTTGAGGCATCGTAGAATGTTGCAGTCTTCAAGCGGCGTCGTTGATTTCGCTGTTCAAGGAAACGCTAATCCCTTGGAAGTCGGGCTCTACTATACAAAGGTGCAGTTGGGTACCCCTCCGGTAGAATTTGATGTGCAGATTGACACTGGCAGTGATGTTCTGTGGGTCAGTTGCAGCTCCTGCAATGGTTGTCCCCAAACAAGTGGGCTTCAGATTCAGCTCAATTTTTTTGACCCTGGGAAATCATCAACATCTTCATCAATAAGTTGTTCTGATCAAAGGTGCACTAGTGGAATGCCATCATCAGATGCTAGCTGTAACGGTTCGAGCAACCAGTGCACATACACTTTCCAGTATGGAGATGGAAGTGGTACATCAGGCTATTATGTGTCAGATATGATGCATTTGGACACCATTTTTCAGGGATCAGTTACCACGAATTCGACAGCGCCGGTAGTTTTTGGTTGTAGCAACCAGCAAACTGGGGACTTGACAAAATCTGACAGAGCAGTTGATGGGATATTTGGACTTGGGCAACAGGAATTGTCTGTTATCTCTCAGCTCTCCTCACAAGGGATTGCTCCAAGAGTATTCTCCCATTGTTTGAAAGGAGATGGTAGTGGTGGGGGTGTATTGGTTCTCGGTGAGATTGTGGAGCCAAACATAGTTTATACTCCACTTGTTCCATCACAACCTCATTATAATATAAATCTGCAGAGCATCTCTGTCAATGGCCAGCCATTGCAAATTGATTCATCAGTTTTTGCAACATCAAACAATGGAGGAACCATTATTGATTCTGGAACAACTTTGGTGTACCTTGCAGAAGCAGCTTATGATCCCTTCGTCAATGCGATTACAGCTGCAATTCCACAAACTGCACGCACTGTTGTTTCCAAGGGAAATAGTTGTTACTTAATCACCGCCAGTGTCACTGACATTTTTCCACAAGTAAGTTTGAACTTTGCTGGTGGTGCATCTATGGTTTTAACACCGCAGGACTACCTTATACAGCAGAATTCTATTGGTGGTGCACAAGTGTGGTGTATTGGCTTTCAGAAAATCCAGGGTCAAGGGGCAACAATTCTAGGAGATCTCGTATTAAAAGACAAAATTGTTGTTTATGATGTGGCTGGTCAACGCATTGGATGGGCTAACTATGACTGTTCTTTATCCGTGAATGTCTCTGCAACAACTGCCACTGGCAGAAGTGAATTTGTGAATCCCGGAGAGTTAGGTGGAAGCACTTCTAGGGGCGATGTATTTAAGTTGACAAAGACAGGGTTGGTCTTGTCTTTCTTTGTGCACATAATACTAATTTTCTGCTTTGGATTCTTATAG 1485 0.4519 MAAAFAIFVALIAAAVAVGFGSPATLTLERAFPTNHGVELSHLRARDMLRHRRMLQSSSGVVDFAVQGNANPLEVGLYYTKVQLGTPPVEFDVQIDTGSDVLWVSCSSCNGCPQTSGLQIQLNFFDPGKSSTSSSISCSDQRCTSGMPSSDASCNGSSNQCTYTFQYGDGSGTSGYYVSDMMHLDTIFQGSVTTNSTAPVVFGCSNQQTGDLTKSDRAVDGIFGLGQQELSVISQLSSQGIAPRVFSHCLKGDGSGGGVLVLGEIVEPNIVYTPLVPSQPHYNINLQSISVNGQPLQIDSSVFATSNNGGTIIDSGTTLVYLAEAAYDPFVNAITAAIPQTARTVVSKGNSCYLITASVTDIFPQVSLNFAGGASMVLTPQDYLIQQNSIGGAQVWCIGFQKIQGQGATILGDLVLKDKIVVYDVAGQRIGWANYDCSLSVNVSATTATGRSEFVNPGELGGSTSRGDVFKLTKTGLVLSFFVHIILIFCFGFL* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2148 494 CDD pepsin_A_like_plant 78 437 IPR034161 -
Apr2g2148 494 Gene3D Acid Proteases 265 444 IPR021109 -
Apr2g2148 494 ProSiteProfiles Peptidase family A1 domain profile. 78 433 IPR033121 -
Apr2g2148 494 SUPERFAMILY Acid proteases 74 440 IPR021109 -
Apr2g2148 494 PANTHER ASPARTYL PROTEASES 11 454 IPR001461 GO:0004190|GO:0006508
Apr2g2148 494 Pfam Xylanase inhibitor C-terminal 281 433 IPR032799 -
Apr2g2148 494 Pfam Xylanase inhibitor N-terminal 78 263 IPR032861 -
Apr2g2148 494 PRINTS Pepsin (A1) aspartic protease family signature 84 104 IPR001461 GO:0004190|GO:0006508
Apr2g2148 494 PRINTS Pepsin (A1) aspartic protease family signature 311 322 IPR001461 GO:0004190|GO:0006508
Apr2g2148 494 PRINTS Pepsin (A1) aspartic protease family signature 409 424 IPR001461 GO:0004190|GO:0006508
Apr2g2148 494 Gene3D Acid Proteases 55 264 IPR021109 -
Apr2g2148 494 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 11 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2148 Apr-Chr2 26625543 26630377 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2148 52 438 Miscellaneous Gene Families AT1G44130 27.861 3.90e-44 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2148 - K00924 gmx:100791299 817.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2148 2 26625543 26630377 Apr2g2148 2 26625543 26630377 ECH
Apr2g2148 2 26625543 26630377 Apr3g1294 3 27417338 27422594 PCT