Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1277 ATGCAGACCCTCACTCAACCCTATTCCTTCAACTATCTCAACCGGGCGCGTAACCCAACCATTCGACCTGCCCCGACCCGAATTGTCGTCAAATGCGGTTACGGGTTCGAATCCGCGGGTTTCTCGCAAGGATTCGGCTCAAGCCGAGCCGATTGGCAAAGCTCGTGCGCCATCTTAGCTAGTAAAGTCGTTTCGCAGCAGGAAGATTCTCCCGCCGGCGAAACACACAGCGGCGCAGACGTCGGCACCGTCAACGGCCACAAAACCTCCGTAACGGATCTCAATCTCGTGCCTATTAATATCAGCGGTAACGACAACAAGCCGGTTCTGCCGACCCCGCTCACCATCTCCGACCTCTCGCCGGCGCCGATGCACGGCTCGCAATTGCGCGTGGCGTATCAAGGCGTTCCCGGCGCGTACTCCGAGGCCGCCGCCGGCAAGGCGTATCCTAACAGCCAAGCCATTCCGTGCGACCAGTTCGAGGTGGCGTTTCAGGCGGTGGAGCTCTGGATCGCCGATCGAGCCGTTCTCCCGGTGGAAAACTCCCTCGGCGGCTCGATCCACCGGAACTACGACCTCCTCCTCCGGCACCGACTCCACATCGTCGGCGAAGTCCAGCTCCCGGTGCACCACTGCCTCCTCGCTCTCCCCGGCGTCCGCAAGGAGTTCCTCACGCGCGTGATTTCGCATCCGCAAGCCCTAGCACAGTGCGAACACTCGCTCACGAAACTCGGTCTCAACGCGGCACGCGAGGCCGTCGACGACACCGCCGGCGCCGCCGAGTACGTGGCCGCGAACAAACTCCTCGACACGGCGGCAATCGCTAGCGCACGCGCGGCGGAGCTCTATGGGCTTCAGGTTCTGGCGGATGGGATCCAAGACGACCCGAATAACGTGACCCGATTCGTTATGTTGGCCCGAGAACCCATTATTCCGCGCACGGATCGGCCGTTTAAAACGAGCATCGTGTTCGCGCACGATAAGGGAACTTCGGTTTTGTTTAAAGTGCTTTCGGCGTTTGCGTTTAGGAACATTAGCCTTACGAAGATCGAGTCGAGGCCTCATCGTAACCGTCCGATTCGGGTCGTTGATGATGAAAGCGAGGGAACCGCTAAGCACTTCGAGTACATATTTTATATTGATTTTGAGGCTTCTATGGCTGAGGTTAGGGCACAGAACGCACTTGCTGAGGTGCAAGAATTCACCTCTTTCTTGCGAGTTTTGGGCAGTTACCCTATGGATATGACACCGTGGAATCCTTCTTGTTAA 1269 0.5808 MQTLTQPYSFNYLNRARNPTIRPAPTRIVVKCGYGFESAGFSQGFGSSRADWQSSCAILASKVVSQQEDSPAGETHSGADVGTVNGHKTSVTDLNLVPINISGNDNKPVLPTPLTISDLSPAPMHGSQLRVAYQGVPGAYSEAAAGKAYPNSQAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGVRKEFLTRVISHPQALAQCEHSLTKLGLNAAREAVDDTAGAAEYVAANKLLDTAAIASARAAELYGLQVLADGIQDDPNNVTRFVMLAREPIIPRTDRPFKTSIVFAHDKGTSVLFKVLSAFAFRNISLTKIESRPHRNRPIRVVDDESEGTAKHFEYIFYIDFEASMAEVRAQNALAEVQEFTSFLRVLGSYPMDMTPWNPSC* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1277 422 CDD ACT_CM-PDT 319 412 - -
Apr3g1277 422 SUPERFAMILY Periplasmic binding protein-like II 130 313 - -
Apr3g1277 422 ProSitePatterns Prephenate dehydratase signature 2. 347 354 IPR018528 GO:0004664|GO:0009094
Apr3g1277 422 PANTHER AROGENATE DEHYDRATASE 22 421 - -
Apr3g1277 422 ProSitePatterns Prephenate dehydratase signature 1. 283 305 IPR018528 GO:0004664|GO:0009094
Apr3g1277 422 Gene3D - 210 296 - -
Apr3g1277 422 ProSiteProfiles Prephenate dehydratase domain profile. 130 307 IPR001086 GO:0004664|GO:0009094
Apr3g1277 422 CDD PBP2_Ct-PDT_like 130 309 - -
Apr3g1277 422 ProSiteProfiles ACT domain profile. 321 412 IPR002912 -
Apr3g1277 422 Pfam Prephenate dehydratase 131 309 IPR001086 GO:0004664|GO:0009094
Apr3g1277 422 SUPERFAMILY ACT-like 302 414 IPR045865 -
Apr3g1277 422 Gene3D - 131 303 - -
Apr3g1277 422 PANTHER PREPHENATE DEHYDRATASE P PROTEIN 22 421 - -
Apr3g1277 422 Gene3D - 314 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1277 Apr-Chr3 27231369 27233378 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1277 K05359 - gmx:100809331 729.169
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1277 3 27231369 27233378 Apr3g1277 3 27231369 27233378 ECH
Apr2g2126 2 26448839 26450713 Apr3g1277 3 27231369 27233378 PCT