Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1258 ATGGACGTTGAACATCAACATTTTCTCAAGGGAAAGACCATTTTAGTTACTGGTACAACGGGCTTCTTAGCAAAAGTTTTTGTAGAAAAGATTCTAAGGACCCAACCAGAGATACAAAAATTGTATCTTCAAGTAAGAGCCTTAAACAATGATTTGGCCACACAACGCTTTCAGAATGAGGTCATTCATAAAGATTTATTTAAAGTACTACGAGATCAGTGGGGCCAAGATTTTGATTCTTTCATATCGAAGAAAGTTGTGATCATATCAGGAGATGTTTCTCTCAACAATTTAGGACTAAAAGATGAAGATCTTAAGACTAAGATGTTGGAGGAGATAGACGTTATTGTGAATTTTGCAGCCTCTACCAAATTTGATGAAAGATTTGATGTTTCAATGGGTGTAAATACAATGGGCGCTTTACATGTCTTAAACTTCGCTAAGAATTGTCATAGGGCAAAGGTTCTTGTGCACATATCAACTGCTTATGTGTGTGGAGAGGCTAAGGATGAAAAAGTAATTCTACAAGAGAAACCATTTGAGATGGGTCAAACCTTGAATGGAACATCAAAATTAGACATACATGCAGAGATGGATTCGTTGAAGAGAAAAATGGATGAACTCCAATCAAAGAATGCTACTGAAAACATTATCAAATATGCAATGAAAGATTATGGAATTAAAAGAGCAAATTTGTATGGTTGGCCCAACACATATGCGTTCACAAAAGCAATGGGAGAGATGCTTGTTATGCATCATAAAGATAACGTGCCCTTAATCATAATACGACCCACCATGGTAACAAGTACATTTAATGATCCCTTTCCAGGTTGGATTGAAGGTATAAGAACTCTTGACAGTATAATAATTGGCTATGGTCAAGGAAAAATTAAATGCTTTCTCGGTCATCCCAAGACAAATTTGGATATAATACCTGCAGACTTGGTTATCAATTGTGTGATCACAATTGTTGCTCATTCAAATCAAGCACTTGCGAATTCCATCTACCACATTTCTTCTTCACTGAGAAATCCTTTCAAAATTTCGGATGTTCATAATATCTGCTATCATTATTTCACTGAAGTTCCATACAAAAATGAAAATGGAAAACCTATAATCATCTCCAAAGCAACTTTATTGACAAGTATGGCTGCTTTCAACATTTACATGACAGCCCGATATGTCTTGCCACTAAAGGTCCTAAATTTGGTGAACAAAGTGTTCCGTCAACACTCTCAAGATGTTTACAATGAGAACTATAGAAAACTCAAAGTGCTGATACGACTAGTTGAACTATATAAACCATACGTGTTTTTCAAGGCCGTGTTTGATGATACAAACACAGAAAATTTACGAAGAGCAACAAAGGGAAGTCTTAACATGGACGGTGCTATATTAGACTTTGACCCCCAGAACATTGATTGGACAGACTAA 1434 0.3598 MDVEHQHFLKGKTILVTGTTGFLAKVFVEKILRTQPEIQKLYLQVRALNNDLATQRFQNEVIHKDLFKVLRDQWGQDFDSFISKKVVIISGDVSLNNLGLKDEDLKTKMLEEIDVIVNFAASTKFDERFDVSMGVNTMGALHVLNFAKNCHRAKVLVHISTAYVCGEAKDEKVILQEKPFEMGQTLNGTSKLDIHAEMDSLKRKMDELQSKNATENIIKYAMKDYGIKRANLYGWPNTYAFTKAMGEMLVMHHKDNVPLIIIRPTMVTSTFNDPFPGWIEGIRTLDSIIIGYGQGKIKCFLGHPKTNLDIIPADLVINCVITIVAHSNQALANSIYHISSSLRNPFKISDVHNICYHYFTEVPYKNENGKPIIISKATLLTSMAAFNIYMTARYVLPLKVLNLVNKVFRQHSQDVYNENYRKLKVLIRLVELYKPYVFFKAVFDDTNTENLRRATKGSLNMDGAILDFDPQNIDWTD* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1258 477 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 341 IPR036291 -
Apr3g1258 477 PANTHER MALE STERILITY PROTEIN 2-RELATED 7 477 IPR026055 GO:0080019
Apr3g1258 477 PANTHER FATTY ACYL-COA REDUCTASE 7 477 - -
Apr3g1258 477 Pfam Male sterility protein 394 477 IPR033640 -
Apr3g1258 477 Coils Coil 191 218 - -
Apr3g1258 477 Gene3D - 3 383 - -
Apr3g1258 477 Pfam Male sterility protein 16 319 IPR013120 -
Apr3g1258 477 CDD FAR-N_SDR_e 12 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1258 Apr-Chr3 27048454 27052571 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1258 1 443 Acyl Lipid Metabolism Gene Families AT3G44560 48.430 4.03e-157 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1258 K13356 - tcc:18590350 520.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1258 3 27048454 27052571 Apr3g1258 3 27048454 27052571 ECH
Apr2g2110 2 26314625 26319591 Apr3g1258 3 27048454 27052571 PCT