Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1212 ATGGGCATGCTTAGCGAAGAACCGAAGTCGAAACCGGTTACGATCCGCGAAGTATGGGCCTCCAATCTAGAATCTGAATTTCAACTCATCCGTGAAGTCATAGATCGTTACCCTTTCATCTCAATGGACACCGAATTCCCAGGCGTCGTTTTCCGCCCACACGTGGACCCTACCAAACCCTACAATCACCGTCACCGTCGTCCCTCCGATCACTACCACCTCCTCAAGTCCAACGTCGACGCGCTCAACCTCATCCAAGTTGGCCTCACTCTCTCCGACGCCGCCGGTAACCTTCCCGATCTCGGAACCGCCGGCAACATTTTCATCTGGGAATTCAACTTCCGCGACTTCGATGTCGCGCGTGACGCCTACGCGCCGGATTCCATCGCTCTCCTCCGCCGCCAGGGGATCGACTTCGCGCGTAACTCCACGGACGGAATCGACTCGGCGCGGTTCGCCGAGTTGATGATGTCGTCGGGACTCGTTTGTAATGAATCAGTGAGTTGGGTGACGTTCCACAGTGCGTACGATTTCGGGTACTTGGTGAAGATCCTGACCCGACGGAGCTTACCGACCCTGTTGGAGGAGTTTTTAAGGGTTGTGAGGGTGTTTTTTGGAAACAACGTTTATGATGTGAAGCACATGATGCGGTTCTGTGAGACACTCTATGGTGGGCTGGACCGGGTTGCACGGACCCTCAACGTGGACCGAGCCGTTGGTAAGTGCCACCAGGCCGGGTCAGATAGCTTGCTGACGTGGCACGCGTTTCAGAAGATTGTTGACATTTATTTTGTAAAGGATGAGCATAAAAAACATGCCGGTGTGTTGTATGGATTAGAGGTTTTTTGTTAA 852 0.5329 MGMLSEEPKSKPVTIREVWASNLESEFQLIREVIDRYPFISMDTEFPGVVFRPHVDPTKPYNHRHRRPSDHYHLLKSNVDALNLIQVGLTLSDAAGNLPDLGTAGNIFIWEFNFRDFDVARDAYAPDSIALLRRQGIDFARNSTDGIDSARFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPTLLEEFLRVVRVFFGNNVYDVKHMMRFCETLYGGLDRVARTLNVDRAVGKCHQAGSDSLLTWHAFQKIVDIYFVKDEHKKHAGVLYGLEVFC* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1212 283 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 11 282 IPR039637 GO:0004535|GO:0030014
Apr3g1212 283 Gene3D - 3 282 IPR036397 GO:0003676
Apr3g1212 283 PANTHER RIBONUCLEASE CAF1, RIBONUCLEASE H-LIKE DOMAIN PROTEIN-RELATED 11 282 - -
Apr3g1212 283 SUPERFAMILY Ribonuclease H-like 15 279 IPR012337 -
Apr3g1212 283 Pfam CAF1 family ribonuclease 18 148 IPR006941 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1212 Apr-Chr3 26646580 26647707 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1212 K12581 - gmx:100500357 503.056
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1212 3 26646580 26647707 Apr3g1212 3 26646580 26647707 ECH
Apr2g2076 2 26059030 26060181 Apr3g1212 3 26646580 26647707 PCT