Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1182 ATGGATTGCTGCATCTATGGCGTCACGAAGCTCCACATCTTCTACACTTTTCTCCTCTTCCTCTTCCCAGCCACCACATTCTCCCTTTCACAGCCTCAAATAAACTCAAACTCAATCCTCGTGGCTCTATTGGACTCGCATTACACAGAGCTCGCAGAACTCGTGGAGAAAGCCATGCTCCTCCAAACCCTAGAAAACACAGTGATGAAACACAACATCACAATCTTTGCACCCAGAAACGAAGCACTGGAACGCGACCTCGACCCCGATTTCAAACGGTTCCTTCTCGAACCTCGCAATCTTCATTCTCTGCAAACCCTCTTGATGTCTCACATCATCCCAACCCGAATCACCCAATCCGAATACCCTCCCAGGTCGACCCGACACCAAACTCTAGCCAAAAGCCACCACCTCACTCTCCAAACTAACCACACTCTCCAGTGGACCATCGACAGTTCCCGGGTCACCCACCCGAATACTATAACCCGACCCGACGGCGTCATCCACGGCATCGACTCCCTCCTCATCCCTCGCTCCGTCCAACACGACTTCAACCTCCGCCGCACCCTCCGCTCCATCGCGGCAGTCAAACCCGAACCCGCCCCGGAAGTTGACCCGAGAACCCACCGCCTGAAAAAACAACCACCGCCGCAAAAACCAGGCTCCCCACCGATCCTTCCGATCTACGACGCCATGGCACCAGGCCCCTCCCTCGCTCCGGCGCCGGCGCCGGGACCCGGTGGACCCCACCACCACTTCAACGGCGAAAAACAGGTAAAAGACTTCATCCAAACCCTCCTCCTCTACGGCGGTTACAACGAAATGGCTGACATACTCGTTAACCTAACTTCCCTGGCAACGGAAATGGGTCGGTTAGTTTCAGAAGGTTACGTGTTAACGGTGTTAGCTCCTAACGACGAAGCAATGGCAAAGTTAACGACGGAACAGTTAAGTGAACCGGGTTCACCGGAACAGATAATGTACTATCATCTGATACCCGAATACCAAACCGAAGAGAGTATGTACAATGCGGTTAGAAGATTCGGGAAGGTTCGATACGACACGTTGAGGTTGCCGCATAAGGTGGTGGCTGAGGAAGCTGATGGCTCGGTTAGGTTCGGGCGTGGTGACGGGTCGGCTTATTTGTTCGACCCGGATATTTATACTGATGGCAGAATCTCCGTTCAGGGGATTGATGGGGTTCTGTTTCCGCCTCAAGAGGTCGATGTCGTTAAGAGTTCGACCCGAACCCGAACGGGTCTACCCGCTAAGGTCGTTAAGCAGAGAAGAGGAAAATTGTTGGAAGCAGCATGTTGGATGCTTGGAACATTTGGACAGAATTCTAGGTTCATCTCCTGCCAATAA 1365 0.5282 MDCCIYGVTKLHIFYTFLLFLFPATTFSLSQPQINSNSILVALLDSHYTELAELVEKAMLLQTLENTVMKHNITIFAPRNEALERDLDPDFKRFLLEPRNLHSLQTLLMSHIIPTRITQSEYPPRSTRHQTLAKSHHLTLQTNHTLQWTIDSSRVTHPNTITRPDGVIHGIDSLLIPRSVQHDFNLRRTLRSIAAVKPEPAPEVDPRTHRLKKQPPPQKPGSPPILPIYDAMAPGPSLAPAPAPGPGGPHHHFNGEKQVKDFIQTLLLYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTEQLSEPGSPEQIMYYHLIPEYQTEESMYNAVRRFGKVRYDTLRLPHKVVAEEADGSVRFGRGDGSAYLFDPDIYTDGRISVQGIDGVLFPPQEVDVVKSSTRTRTGLPAKVVKQRRGKLLEAACWMLGTFGQNSRFISCQ* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1182 454 SMART fasc_3 300 405 IPR000782 -
Apr3g1182 454 SMART fasc_3 74 178 IPR000782 -
Apr3g1182 454 Gene3D FAS1 domain 40 178 IPR036378 -
Apr3g1182 454 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 1 454 - -
Apr3g1182 454 MobiDBLite consensus disorder prediction 216 230 - -
Apr3g1182 454 Pfam Fasciclin domain 47 177 IPR000782 -
Apr3g1182 454 Pfam Fasciclin domain 284 403 IPR000782 -
Apr3g1182 454 SUPERFAMILY FAS1 domain 238 405 IPR036378 -
Apr3g1182 454 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 1 454 IPR044654 -
Apr3g1182 454 Gene3D FAS1 domain 278 405 IPR036378 -
Apr3g1182 454 MobiDBLite consensus disorder prediction 197 252 - -
Apr3g1182 454 ProSiteProfiles FAS1/BIgH3 domain profile. 35 175 IPR000782 -
Apr3g1182 454 ProSiteProfiles FAS1/BIgH3 domain profile. 259 387 IPR000782 -
Apr3g1182 454 SUPERFAMILY FAS1 domain 37 178 IPR036378 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1182 Apr-Chr3 26324241 26328762 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1182 - - gmx:100802279 691.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2044 2 25760822 25764030 Apr3g1182 3 26324241 26328762 PCT