Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1133 ATGTCTAAAATAATGTCTGGGTTTTTGGGTTTCTTTGTGGGTCTTTTGTTGTTGGTGGGTGCGGCTGTTGCTACCTCTGCCAAGTTTGATCAACTCTTCCAACCAAGTTGGGCTTTGGACCATTTCATTCATGAAGGAGACCTTCTTAAACTCAAACTTGACAATTATTCTGGTGCGGGTTTTGGATCTAAAAGCAAGTATATGTTTGGGAAAGTCACCATCCAGCTCAAGCTGGTGGAGGGTGACTCTGCTGGAACTGTCACTGCTTTCTATATGTCAACGGATGGTCCAAACCACAACGAGTTTGATTTTGAGTTTTTGGGCAACACTTCAGGGGAACCTTACTCAGTTCAAACCAATGTGTACGTGAATGGAGTGGGTAACAGGGAGCAAAGGCTCGACCTTTGGTTCGACCCCACCCAGGATTTCCATACATATTCTATATTCTGGAATCAACGGCAAGTTGTGTTTCTAGTGGATGAAACGCCAATAAGGGTGCACTCAAACATGGAACACAAGGGAATTCCTTTTCCTAAAGACCAACCCATGGGTGTATACAGTTCTATATGGAATGCAGACGATTGGGCCACACAGGGTGGTCGTGTGAAGACGGATTGGAGCCATGCACCCTTCATTGCCACCTACAAGGCCTTCGAAATCAATGCCTGTGAGTGTCCTGTGTCAGTGGCTGCGGTGGATAATGCTAAGAGGTGTAGTAGTAGTGAGGATAAGAAGTATTGGTGGGATGAGCCTAATTTGTCTGAACTCAGCTTGCATCAGAGCCATCAGCTTATGTGGGTTAAGGCCAAACATATCTTCTATGACTATTGCGCTGACACTGCTAGGTTCCCTGTCACTCCTGCTGAGTGTGTCCATCACCGTCACAATTGA 891 0.459 MSKIMSGFLGFFVGLLLLVGAAVATSAKFDQLFQPSWALDHFIHEGDLLKLKLDNYSGAGFGSKSKYMFGKVTIQLKLVEGDSAGTVTAFYMSTDGPNHNEFDFEFLGNTSGEPYSVQTNVYVNGVGNREQRLDLWFDPTQDFHTYSIFWNQRQVVFLVDETPIRVHSNMEHKGIPFPKDQPMGVYSSIWNADDWATQGGRVKTDWSHAPFIATYKAFEINACECPVSVAAVDNAKRCSSSEDKKYWWDEPNLSELSLHQSHQLMWVKAKHIFYDYCADTARFPVTPAECVHHRHN* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1133 296 PRINTS Glycosyl hydrolase family 16 signature 59 77 IPR008264 GO:0004553|GO:0005975
Apr3g1133 296 PRINTS Glycosyl hydrolase family 16 signature 117 130 IPR008264 GO:0004553|GO:0005975
Apr3g1133 296 PRINTS Glycosyl hydrolase family 16 signature 135 152 IPR008264 GO:0004553|GO:0005975
Apr3g1133 296 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 5 294 - -
Apr3g1133 296 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 27 215 IPR000757 GO:0004553|GO:0005975
Apr3g1133 296 PIRSF EndGlu_transf 1 295 IPR016455 GO:0010411|GO:0016762|GO:0042546
Apr3g1133 296 CDD GH16_XET 24 290 IPR016455 GO:0010411|GO:0016762|GO:0042546
Apr3g1133 296 Gene3D - 16 296 - -
Apr3g1133 296 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 5 294 IPR044791 GO:0004553
Apr3g1133 296 Pfam Glycosyl hydrolases family 16 32 207 IPR000757 GO:0004553|GO:0005975
Apr3g1133 296 SUPERFAMILY Concanavalin A-like lectins/glucanases 29 294 IPR013320 -
Apr3g1133 296 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 243 290 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1133 Apr-Chr3 25901117 25903487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1133 59 295 Glycoside Hydrolase AT4G03210 74.684 5.00e-140 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1133 K08235 - gmx:100785982 546.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1133 3 25901117 25903487 Apr2g1984 2 25236020 25238499 PCT