Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1984 ATGTCTAAGATGTTTGGATTGTTTGTGGGTTTTGTGTTGATGGGGTTAGCTGCCTCTGCCAAGTTTGACGAACTCTTTCAGCCTAGTTGGGCTATGGATCATTTCATCCATGAAGGAGAACTTCTTAAATTGAAACTTGATAATTACTCCGGTGCTGGTTTTGGATCCAAGAGCAAGTATATGTTTGGGAAAGTGAGCATCCAGCTTAAGCTTGTGGAGGGTGACTCTGCTGGAACCGTTACTGCATTCTATATGTCATCAGACGGCCCAAATCACAACGAATTTGATTTTGAGTTTTTGGGCAACACCACCGGCGAACCTTACTCAGTGCAGACCAATGTGTATGTGAATGGGGTCGGTAACAGGGAGCAGAGACTCAACCTCTGGTATGCCCCCACCAAGGATTTCCATACCTACTCTATCTTCTGGAACCAGCGCCAAGTTATATTCCTAGTGGATGATACGCCAGTGAGGGTGCATACAAATTTAGAACACAAAGGAATTCCATTCCCAAAAGACCAAGCGATGGGTGTGTACAGCTCGATATGGAATGCAGACGATTGGGCGACTCAGGGTGGTCGTGTGAAGACAGATTGGAGCCATGGACCCTTCATTGCGACCTACAAGGATTTCGAGATCAATGCATGTGAGTGCCCGGTGCCAGTGACGTCAGCAGATAACACTAAGAAATGTAGCAGCTCTGAGGATAAGAAGTATTGGTGGGACGAACCAACAATGGCGGAACTTACCTTGCACCAGAGCCACCAGCTTATGTGGGTTAAGGCTAACCATATGGTTTATGATTATTGCACCGACACTGCTAGGTTCCCTGTCACACCTGCTGAGTGTGTCCATCACACTCACCACTGA 870 0.469 MSKMFGLFVGFVLMGLAASAKFDELFQPSWAMDHFIHEGELLKLKLDNYSGAGFGSKSKYMFGKVSIQLKLVEGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYSVQTNVYVNGVGNREQRLNLWYAPTKDFHTYSIFWNQRQVIFLVDDTPVRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHGPFIATYKDFEINACECPVPVTSADNTKKCSSSEDKKYWWDEPTMAELTLHQSHQLMWVKANHMVYDYCTDTARFPVTPAECVHHTHH* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1984 289 CDD GH16_XET 17 283 IPR016455 GO:0010411|GO:0016762|GO:0042546
Apr2g1984 289 Gene3D - 11 288 - -
Apr2g1984 289 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 14 287 - -
Apr2g1984 289 PIRSF EndGlu_transf 2 288 IPR016455 GO:0010411|GO:0016762|GO:0042546
Apr2g1984 289 Pfam Glycosyl hydrolases family 16 25 200 IPR000757 GO:0004553|GO:0005975
Apr2g1984 289 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 20 208 IPR000757 GO:0004553|GO:0005975
Apr2g1984 289 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 14 287 IPR044791 GO:0004553
Apr2g1984 289 SUPERFAMILY Concanavalin A-like lectins/glucanases 22 287 IPR013320 -
Apr2g1984 289 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 236 283 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1984 Apr-Chr2 25236020 25238499 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1984 52 288 Glycoside Hydrolase AT4G03210 75.105 4.14e-141 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1984 K08235 - gmx:100527891 573.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1984 2 25236020 25238499 Apr2g1984 2 25236020 25238499 ECH
Apr3g1133 3 25901117 25903487 Apr2g1984 2 25236020 25238499 PCT