Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1101 ATGGCCGCTGTTACTTCTTCGTTCTCTTTCTCTACGCTCACTCAATCTTCGCAGAGGAACCTCACTCCCTCTTCCACTCGCTTTCCTGATTCCAATTCACGCGCCTTTCGCTTCAACCTCGGTTTCTCCTGCCACTATGTTGGAGTTCGAGCTTCGAATTCCGCTTCCAAATTTGTTGTTCGCTGCTCCTCTTCCGTGTCAGACCCTCCAACTGTTTCTGAGACAAAGTCAAATTTTCTCAAGGCATATAAGCGACCAATTCCTAGTATCTACAACTCGGTACTGCAGGAGCTTATTGTCCAGCAACATTTGATGAGATACAAGAGGTCATACTGTTATGACCCTGTATTTGCTCTTGGCTTTGTCACTGTATATGAGCAACTCATGGAAGGGTATCCTAGTGATGAGGACCGAGATGCCATCTTCCAAGCATACATTAATGCATTGAATGAAGATCCTGACCAATACAGATTAGATGCAAAGAAATTGGAAGAGTGGGCTCGGGCTCAAAACTCAACTTCACTAGTTGAGTTTTCATCCAGAGAGGGAGAAGTTGAGGGGATATTAAAGGATATTGTAGAAAGAGCAGGAGGAAAGGGGGATTTCAGTTATAGTCGTTTCTTCGCAATAGGCCTCTTTCGTCTTCTTGAGTTGGCAAATGCAATGGAACCAATAATTTTGGAAAAGCTGTGTGCAGTTTTGAATGTCAACAAAAGAAGTGTGGATCGGGATTTGGATGTGTACCGTAATATGCTTTCTAAGCTGGTTCAAGCTAAAGAGCTGCTAAAGGAATATGTTGACAGGGAGAAGAAGAAAAGAGAAGAAAGGGCTGAACCGCAAAAGGCTAATGAAGCCTTTACGAAATCTTTGGGACAACAGCAATTTTCTGGCATGTAG 897 0.4348 MAAVTSSFSFSTLTQSSQRNLTPSSTRFPDSNSRAFRFNLGFSCHYVGVRASNSASKFVVRCSSSVSDPPTVSETKSNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRSYCYDPVFALGFVTVYEQLMEGYPSDEDRDAIFQAYINALNEDPDQYRLDAKKLEEWARAQNSTSLVEFSSREGEVEGILKDIVERAGGKGDFSYSRFFAIGLFRLLELANAMEPIILEKLCAVLNVNKRSVDRDLDVYRNMLSKLVQAKELLKEYVDREKKKREERAEPQKANEAFTKSLGQQQFSGM* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1101 298 Pfam Thylakoid formation protein 71 276 IPR017499 GO:0010207|GO:0015979
Apr3g1101 298 Coils Coil 248 278 - -
Apr3g1101 298 Hamap Protein Thf1 [thf1]. 66 274 IPR017499 GO:0010207|GO:0015979
Apr3g1101 298 TIGRFAM PS_II_psb29: photosystem II biogenesis protein Psp29 68 273 IPR017499 GO:0010207|GO:0015979
Apr3g1101 298 MobiDBLite consensus disorder prediction 269 298 - -
Apr3g1101 298 PANTHER PHOTOSYSTEM II BIOGENESIS PROTEIN 1 287 - -
Apr3g1101 298 PANTHER PROTEIN THYLAKOID FORMATION 1, CHLOROPLASTIC 1 287 IPR017499 GO:0010207|GO:0015979
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1101 Apr-Chr3 25593107 25597380 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1101 - - gmx:100779964 481.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1101 3 25593107 25597380 Apr3g1101 3 25593107 25597380 ECH
Apr2g1961 2 24985920 24989610 Apr3g1101 3 25593107 25597380 PCT