Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1961 ATGGCGGCTCTCACTTCTCTCTCTTTCTCAGCACTGATTCATTCCTCAGAAAGAAAAGTGACCCTCTCTTCCACTCGTTTTCTGGCTTCTTGTTCAGAACTCTTGGGGTTCCCCACCCATTTCTCGTACCATTATGTGGATGTTCGAGCTTCTAACTCCTCGTCTAAGATGGTTGTTCAAAGCATGTCTTCTGCTTCAGATGTTCCTACTGTTTCTGAGTCAAAGTTAAATTTCCTCAAGGCATATAAGCGACCAATCCCTAGTATCTACAACACCACACTGCAGGAGCTCATGGTCCAGCAACATTTAATGAGATACAAGAGATCTTACCGCTATGACCCTGTGTTTGCTCTTGGTTTTGTCACTGTATATGATAAACTCATGGAAGGGTATCCTAGTGATGAGGACCGAGATGCCATCTTCCAAGCATACATTAAAGCATTGAAGGAAGATCCAGAAAAATATAGAATGGATGCACAGAAGTTGGAAGAGTGGGCTAGGGCTCAAAACTCAACTACCCTGGTTGAGTTTTCATCCAAAGGAGGAGAAGTTGAAGGGATGTTAAAGGATATTGCAGAAAGAGCAGGAGGAAAGGGGGGATTCAGTTATAGTCGTTTCTTTGCAGTAGGTCTCTTTCGGCTTCTTGAGTTGGCGAATGCAACAGAACCAACAATTTTGGAAAAGCTTTGTGCTGCTTTGAACATCAACAAAAGAAGTGTTGATCGGGACTTGGACGTGTATCGTAATCTGCTTTCAAAGTTGGTTCAAGCAAAAGAGCTGCTAAAGGAGTATGTTGACAGGGAGAAGAAGAAAAGAGAAGAAAGGGCTGAACCACAAAAGACTAACGAGGCCATCACACAATGTTTGGGACAAGAATTGCCTGGTCTGTAG 891 0.4332 MAALTSLSFSALIHSSERKVTLSSTRFLASCSELLGFPTHFSYHYVDVRASNSSSKMVVQSMSSASDVPTVSESKLNFLKAYKRPIPSIYNTTLQELMVQQHLMRYKRSYRYDPVFALGFVTVYDKLMEGYPSDEDRDAIFQAYIKALKEDPEKYRMDAQKLEEWARAQNSTTLVEFSSKGGEVEGMLKDIAERAGGKGGFSYSRFFAVGLFRLLELANATEPTILEKLCAALNINKRSVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKREERAEPQKTNEAITQCLGQELPGL* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1961 296 Coils Coil 247 277 - -
Apr2g1961 296 Pfam Thylakoid formation protein 70 275 IPR017499 GO:0010207|GO:0015979
Apr2g1961 296 PANTHER PHOTOSYSTEM II BIOGENESIS PROTEIN 1 286 - -
Apr2g1961 296 PANTHER PROTEIN THYLAKOID FORMATION 1, CHLOROPLASTIC 1 286 IPR017499 GO:0010207|GO:0015979
Apr2g1961 296 TIGRFAM PS_II_psb29: photosystem II biogenesis protein Psp29 68 272 IPR017499 GO:0010207|GO:0015979
Apr2g1961 296 Hamap Protein Thf1 [thf1]. 65 273 IPR017499 GO:0010207|GO:0015979
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1961 Apr-Chr2 24985920 24989610 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1961 - - aprc:113854887 551.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1961 2 24985920 24989610 Apr2g1961 2 24985920 24989610 ECH
Apr2g1961 2 24985920 24989610 Apr3g1101 3 25593107 25597380 PCT