Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1079 ATGCCTCAGCACCAACTAAATCCAATGGAACCACTTCTCAGTAGCAACAATGGCAATGGCAACAGTGACTATGATATCATAAGCTGGTTTGAAGATGTATCCAAGAACGCTGGTTCAGTTCAGACTCAGTTGCTGTGCTATATTCTGAAGCAGAACTATAAGGTGGAATATCTTAAGAAATGGTTAGGGAACTACAATATCCTAGAGATGGATGCATGTGCATTGGAATCCCTTTTCACTTCTGTGGTTCCCCTTGCCTCACATGCTGAATTTGAGCCATTTATCCAAAGGATTGCAGATGGGGACACAAGTCCTTTACTCACTCAACAACCCATAACCACTCTTTCCTTGAGGGTTTATCCTATAAGGGAGGGTGGAAGGATTCTTGAATTCATATACAGCAGCAACCGGTTCAAAACCAAAGGAGGTTTAACAGTAGGAACAGCCACAACACACTACTATGCAAGTGAAGAATTCATAATCAAGCAGCATAAGACAAAGTCATTTACTTGTAGTCCTGAAGAAGTGATTTCTGGTGGAGACTATATGCAATCCACATACTGCCACCTCCTTCTTGGCCTTTTCTTCTCTGACCAAGTGGAGTTTATCACCTCAGCTTTTGTCTATAGCATAGTACAAGCCTTTTGCAGTTTTGAAGAACTTTGGAGTGAAATATGCAATGACATCAGAGATGGAACACTTAGTTCAAGGATCAAATCACCAAAAATGAGAAGGGCTGTTTTGGATATCATATCTCCAAACCCAAATTTGGGTTTGAAAATAGAAGCTGCTTGCCAGGTGCTACAAGTGGTGGATTGGTTTGGTTTGATTCCGAAGCTTTGGCCAAATGCTAAGTACGTTTATTCCATAATGACAGGGTCTATGCAACCTTATTTGAAAAAACTTAGGCATTATGCAAGTGGATTGCCTCTGGTTAGTGCTGATTATGGCTCAACTGAAAGCTGGATAGGGGTTAATGTGGATCCAAATTTGCCACCAGAAGATGTAACATTTGCTGTGGTGCCCACTTTCTCTTACTTTGAGTTCATACCACTTCATCGACATAAAAAATATCCAACTTCAGTTGCTGATGATTTCATAGAAGATAAGCCAATTCCACTATCTCAGATCAAAGTTGGACAAGAGTATGAAATAGTCCTCACTACGTGCACAGGACTATACAGGTGCAGGTTAGGGGATGTGGTGGAAGTGGCTGGCTTTCACAATGGGACCCCAAAATTGAACTTTGTATGCAGAAGAAAGCTAATACTGACAGTGAATATAGACAAAAACACAGAGAAGGACCTTCAACTAGTGGTGGAGAGGGGTTCTGAGCTTCTGAATGAGGCAAAAGCTGAGCTTGTTGATTTCACTAGTTATGCCAACGTGTCAAACGAACCAGGGCATTATGTAATTTACTGGGAGATAAAAGGGGAAGTTGAGGACAAGGTACTAGGCGCATGTTGCACTGAAATGGACAAGTGTTTTGCTGATCATGGCTACGTGGTGTCTAGAAAAACCAACTCAATAGGGCCCCTTCAGCTTTGCATTGTGGAGAGAGGGACTTTCAAGAAGATTTTGGACAATTTCATTGCAAATGGGGCAGCTTTGAGCCAATTCAAGACCCCGAGATGCACTAATAATCATACCCTCCTTAAAATTTTAAGTTCTTCCACCATTCAAAGGTTTCGTAGCACTGCATATGCCTCAAAGGAACAGTGA 1722 0.417 MPQHQLNPMEPLLSSNNGNGNSDYDIISWFEDVSKNAGSVQTQLLCYILKQNYKVEYLKKWLGNYNILEMDACALESLFTSVVPLASHAEFEPFIQRIADGDTSPLLTQQPITTLSLRVYPIREGGRILEFIYSSNRFKTKGGLTVGTATTHYYASEEFIIKQHKTKSFTCSPEEVISGGDYMQSTYCHLLLGLFFSDQVEFITSAFVYSIVQAFCSFEELWSEICNDIRDGTLSSRIKSPKMRRAVLDIISPNPNLGLKIEAACQVLQVVDWFGLIPKLWPNAKYVYSIMTGSMQPYLKKLRHYASGLPLVSADYGSTESWIGVNVDPNLPPEDVTFAVVPTFSYFEFIPLHRHKKYPTSVADDFIEDKPIPLSQIKVGQEYEIVLTTCTGLYRCRLGDVVEVAGFHNGTPKLNFVCRRKLILTVNIDKNTEKDLQLVVERGSELLNEAKAELVDFTSYANVSNEPGHYVIYWEIKGEVEDKVLGACCTEMDKCFADHGYVVSRKTNSIGPLQLCIVERGTFKKILDNFIANGAALSQFKTPRCTNNHTLLKILSSSTIQRFRSTAYASKEQ* 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1079 573 PANTHER INDOLE-3-ACETIC ACID-AMIDO SYNTHETASE GH3.10 21 117 - -
Apr3g1079 573 PANTHER INDOLE-3-ACETIC ACID-AMIDO SYNTHETASE GH3.10 118 568 - -
Apr3g1079 573 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 118 568 IPR004993 -
Apr3g1079 573 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 21 117 IPR004993 -
Apr3g1079 573 Pfam GH3 auxin-responsive promoter 29 116 IPR004993 -
Apr3g1079 573 Pfam GH3 auxin-responsive promoter 124 549 IPR004993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1079 Apr-Chr3 25432954 25436807 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1079 25 566 EF-hand Containing Proteins AT1G23160 33.164 5.28e-104 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1079 K14487 - gmx:100792358 1000.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1079 3 25432954 25436807 Apr3g1079 3 25432954 25436807 ECH
Apr2g1940 2 24852234 24855968 Apr3g1079 3 25432954 25436807 PCT