Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0878 ATGGTGAAAGGTCCAGGTCTCTACACTGATATCGGCAAGAGGGCTCGAGATCTTCTGTTCAAGGATTATCAAAATGACCACAAATTCACCATCACGACGTACACTTCTTCGGGAGTGGAAATCACTTCGACTGGAGTCAGGAAGGGTGAAATGTATTTGGCCGATGTCAGCACGAAGCTGAAGAACAAGAACATCACAACTGATGTTAAAGTGGACACTAACTCAAATCTACTTACAACCATTACTGTGGATGAGCCTGCACCTGGACTCAAGACCATTTTTAGCTTTATTTTTCCAGATCAGAAATCTGGCAAGGTGGAACTTCAGTACCAGCATGAGTACGCTGGAATCAGCACCAGCATTGGATTGACAGCAAATCCCGTTGTTAACTTCTCTGGTGTGGTTGGAAATAATTTGGTTGCTGTTGGGACAGATCTTTCATTTGATACTGCCTCTGGCAACTTCACAAAGTACAATGCAGGGCTGAACATTACTCATGCTGACCTCATTGCTTCTCTAACTCTAAATGATAAAGGTGACACCCTGAATGCCTCGTATTACCACATTGTGAGCCCGCTGACTAACACTGCCGTTGGTGCCGAGCTTTCACATAGCTTTCCTAGCAACGAAAATATTCTCACCATTGGTACACAGCATGCTCTGGACCCATTAACCTTGTTGAAAGCACGGGTGAACAACTATGGCAGGGCAAGTGCTCTTATCCAGCATGACTGGAATCCAAGAACCCGATTCTCTCTTGTTGGTGAGGTGGATACCGGGGCAATTGAAAAGAGTGCAAAGGTTGGTCTCGCTGTGGCCTTGAAACCTTAA 831 0.4537 MVKGPGLYTDIGKRARDLLFKDYQNDHKFTITTYTSSGVEITSTGVRKGEMYLADVSTKLKNKNITTDVKVDTNSNLLTTITVDEPAPGLKTIFSFIFPDQKSGKVELQYQHEYAGISTSIGLTANPVVNFSGVVGNNLVAVGTDLSFDTASGNFTKYNAGLNITHADLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELSHSFPSNENILTIGTQHALDPLTLLKARVNNYGRASALIQHDWNPRTRFSLVGEVDTGAIEKSAKVGLAVALKP* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0878 276 ProSitePatterns Eukaryotic mitochondrial porin signature. 219 241 IPR001925 GO:0005741|GO:0008308|GO:0098656
Apr3g0878 276 Pfam Eukaryotic porin 4 269 IPR027246 GO:0005741|GO:0055085
Apr3g0878 276 Gene3D Porin 1 275 IPR023614 -
Apr3g0878 276 PANTHER MITOCHONDRIAL OUTER MEMBRANE PROTEIN PORIN 3 1 276 - -
Apr3g0878 276 CDD Porin3_VDAC 5 275 IPR001925 GO:0005741|GO:0008308|GO:0098656
Apr3g0878 276 PANTHER VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL 1 276 IPR001925 GO:0005741|GO:0008308|GO:0098656
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0878 Apr-Chr3 22858479 22860936 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0878 K15040 - gmx:100787662 520.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0878 3 22858479 22860936 Apr3g0878 3 22858479 22860936 ECH
Apr3g0878 3 22858479 22860936 Apr1g0889 1 11954846 11956830 ECH
Apr3g0878 3 22858479 22860936 Apr9g3030 9 37113366 37114935 ECH
Apr3g0878 3 22858479 22860936 Apr6g0177 6 1736987 1739866 ECH