Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0889 ATGAGCAGGTATCCGGGCTTATATTTTGATATTGGAAAGAAGGCCAGAGATGTTCTTCACAAGGATTATGCTCAACAACCACCAATTCACTTTAACTACAGATTCTTGGACTGGAATTTAGATCTCTCTTGTCAAGTAGAAGAAATTGTGCCAGGAGTAAGGGGCCTTTTCAATTGTACCATACCTGACTCTGGGAAGGTTGAACTTCAACACCTGAACAAATACAGTGGGTTTAGTGGAAGCGTTGGATTATTAGGAGACCCAGAAAAAGGATATAACCCTGTTGCAAACATTTCTGGTCTTATAGGAACAAGAATTCTGACCTTGGGAGCTAATCTTGCCTATGACCTATCAACAAGAGCAATTAGCAATCTGAATGCTGGTTTGAGCTTGAGCAGTCCCTACCTTGTTGCTTCCTTGACCTTGCATGACAATTTTGAAAATGTGAAAGCTTCTTGTTATTTTGAAGTGAACCCCCTAACCAAGACTGCAATTGCAGCAGAGGTGAAGTATGACCTTCTAGACAATGAGACTACGGGCGTCACCGTTGGTGCTCAGCATGCACTGTTTCCTTGTACTTTGCTAAAGGCTCGACTTAACTCCTATGGTAAGGTGAGTGCTCTTATTCGACAAAAGCTGGGGAACAAATTTGCGATAACTGTGGCAGGAGAGTTGAATTTGAATGAGAAAGATAAAGAAAAGTTTCCTAAGGTTGGAGTCTCCATGGCTCTAAGATAA 738 0.4173 MSRYPGLYFDIGKKARDVLHKDYAQQPPIHFNYRFLDWNLDLSCQVEEIVPGVRGLFNCTIPDSGKVELQHLNKYSGFSGSVGLLGDPEKGYNPVANISGLIGTRILTLGANLAYDLSTRAISNLNAGLSLSSPYLVASLTLHDNFENVKASCYFEVNPLTKTAIAAEVKYDLLDNETTGVTVGAQHALFPCTLLKARLNSYGKVSALIRQKLGNKFAITVAGELNLNEKDKEKFPKVGVSMALR* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0889 245 PANTHER VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL 1 245 IPR001925 GO:0005741|GO:0008308|GO:0098656
Apr1g0889 245 Gene3D Porin 3 245 IPR023614 -
Apr1g0889 245 Pfam Eukaryotic porin 38 235 IPR027246 GO:0005741|GO:0055085
Apr1g0889 245 PANTHER PORIN/VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL PROTEIN 1 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0889 Apr-Chr1 11954846 11956830 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0889 K15040 - gmx:100803984 390.963
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0889 1 11954846 11956830 Apr9g3030 9 37113366 37114935 ECH
Apr6g0177 6 1736987 1739866 Apr1g0889 1 11954846 11956830 ECH
Apr3g0878 3 22858479 22860936 Apr1g0889 1 11954846 11956830 ECH
Apr1g0889 1 11954846 11956830 Apr1g0889 1 11954846 11956830 ECH