LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr3g0363	ATGGGAAACACAAAAACTTTAGCTGCAGAGTCTCTCTCTGTTTTTCTTTTGCTTTGTTTCTATGGCACACTAGTTTGTGCTCAGTACATAAAGTATAATACTGGAGCTGGTATTGTGCCAGGAAAATTGAACATTCACCTGGTTCCACATTCCCACGATGATGTTGGTTGGCTCAAGACCGTGGATCAGTACTATGTTGGGTCAAACAATAGTATTCAGGGGGCATGTGTTCAGAACGTATTGGACTCGGTGGTTGTGTCTCTTCAGAAGGATCCAAATAGAAAGTTTGTGTTTGCTGAAATGGGGTTTTTCCATCGATGGTGGGTAGAACAAAGTCCAGAAATACAAGAGGGGGTGAGAAAGCTTGTGGATGCAGGGCAGCTAGAGTTCATAAATGGTGGTTGGTGCATGCACGATGAAGCCACGTGCCACTACATAGACATGATTGATCAAACTACTTTGGGTCATCGCTTCATAAAGGATCAGTTTAATAAGACCCCTCGTGTTGGATGGCAGATTGATCCATTTGGACATTCTGCAGTTCAGGCTTACTTGTTAGGGGCTGAGCTTGGGTTTGATTCTGTGCATTTCGCTAGGATTGATTATCAGGACAGAGCTAAGCGTAAAGCTGATAAGTCTCTTGAAGTTGTTTGGCGAGGGTCCAAAACATTTGGTTCTTCAGCTCAGATTTTTGCCAATGCTTTTCCTGTTCACTACAGTGCTCCAAATGGTTTTGATTTTGAAGTCGATAATGACTTTGCTCCGTTACAGGATGATCCTCGTATTTTTGACTACAACGTTGAACAGCGTGTCAAAGATTTTATTAATGCCGCTACTGCCCAAGCAAATGTGACGAGGACAAACCATATAATGTGGACAATGGGTGATGATTTCCGGTACCAATATGCAGAGTCTTGGTTCAAGCAAATGGATAAATTAATTCACTATGTTAATAAAGATGGTAGAGTCAATGTCTTGTATTCTACTCCATCTATTTACACCAATGCCAAAAATGCTGCAAATCAAACATGGCCACTGAAAACAGATGATTATTTCCCGTATGCCGATGCACCAAATGCTTATTGGACTGGTTTTTTCACCAGTCGCCCAGCCTTAAAGCGATATGTTAGGATGCTAAGTGGATACTATTTGGCTGCACGTCAACTTGAATTTTTGGCTGGAAATAAATCAACCAAATACCAAACTTTTGACCTTGGAGATGCTCTTGGAATTGCACAACATCATGATGCTGTCAGTGGCACTGCCAAGCAGCATACAACCAATGACTATGCCAAAAGACTGGCCATTGGAGCCTCTAAGACTGAAGCAGTTGTTAGTTCTTCTCTGGCCTGTCTTACAAGCAAGAAATCAGGTGATCGGTGTTCAGCACCTGCATCAGCATTTGCCCAGTGTCAATTACTCAATATCAGTTACTGCCCTCTAACAGAAGACAGTATTCCTCAAGCGAAGAGTTTGGTTGTAGTGGTCTATAACCCACTTGGATGGAATCGTACAGATATTGTCAGAATACCGGTTAATGATGCCAATCTTGTTGTTAAAGATTCATCCGGCAATAACCTTGAAGTACAGTATGTGGATGTGGACAATGTTACAACAAATTTAAGAAAATTCTATGTGAAGGCATATTTGGGGCTGTCTCCAACACAAGCCCCAAAGTACTGGCTTCTCTTTCAGGTGTCAGTACCTCCACTTGGATGGAGTACGTACTTCATTTCTAAAGCAACTGGAAAAGGAACTAGGAGAAAAAATCTGTCACGCTTCAGTAGTATGAATGAGACCATTACCATAGGGCCAGGAAATTTAAAGATGTCCTTTTCTTCAACCACTGGCCAACTCAAACGGATGTATAATTCCAGAACTGGAGTAAATATACCAATTCAGCAAAGCTACCTCTGGTATGGATCTAGTAATGGTGATAGTGATTCTCAGGCCTCTGGTGCATATATATTCCGGCCTGATGGATCCCCTCCACGCATTGTTTCAAGATCAGTGCCCACCACCGTAATCCATGGACCAATAGTTGATGAAGTTCATCAGACATTTAGCTCTTGGATTTACCAGGTTACCAGGCTTTACAAAGGCAAAGATCATGCTGAAATCGAATTCACTATTGGTCCAATTCCTACTGATGATGGAGTTGGAAAAGAGGTGATCACACAAATGACAGCAAATATGGCCACAAACAAGGAGTTTTATACTGATTCTAATGGAAGAGATTTTCTGAAACGAGTTCGAGATCATAGGGAAGATTGGCCCCTTCAAGTTACTCAACCAGTAGCAGGAAATTATTACCCACTTAATCTTGGAGTTTATACAAAGGATAAGATATCCGAATTCTCAGTCTTAGTTGATCGTGCCACTGGTGGGTCCAGCATCAAAGATGGTGAGGTGGAATTGATGCTTCATAGGCGTATTCTCCAGGATGATAGTCGAGGAGTAGGAGAAGCACTTGATGAAGAAGTTTGCGTGGACAATAATAAGACATGTGAAGGGCTAACAGTCAGAGGAAATTACTATGTCAGCATCCACAAGCTTGGAGCTGGTTCACGTTGGCGTCGCACAACTGGTCAGGAAATCTACTCACCAATGTTACTTGCTTTTACACACGAGAACGTGGAAAATTGGAAGTCCTCTCATTTGACCGAAGGAACTACCACGGATCCAAATTACAGCTTGCCTCCCAATGTTGCTCTGATAACTCTTGAGGAGTTGGATGGTGGAATTGTGCTTCTTCGTTTGGCACATCTGTATGAGCCAAGTGAAGATGCTGAGTATTCAACACTCACCAAAGTTGAACTGAAGAAGTTGTTTGCCAGTAAAACGATAAAGGAGTTGAAGGAGGTAAGTTTATCAGCTAACCAAGAGAAATCAGAAATGAAGAAGATGAAATGGAACGTTGAGGGGGACAAAGGGCAAGAACCTAAAGCAGTCAGGGGTCGCCCTGTCAGCAATTCCGATTTTGTTGTTGAGCTTGCTCCCATGGAAATTCGCACTTTCCTGTTGAAATTTTAA	3033	0.4224	MGNTKTLAAESLSVFLLLCFYGTLVCAQYIKYNTGAGIVPGKLNIHLVPHSHDDVGWLKTVDQYYVGSNNSIQGACVQNVLDSVVVSLQKDPNRKFVFAEMGFFHRWWVEQSPEIQEGVRKLVDAGQLEFINGGWCMHDEATCHYIDMIDQTTLGHRFIKDQFNKTPRVGWQIDPFGHSAVQAYLLGAELGFDSVHFARIDYQDRAKRKADKSLEVVWRGSKTFGSSAQIFANAFPVHYSAPNGFDFEVDNDFAPLQDDPRIFDYNVEQRVKDFINAATAQANVTRTNHIMWTMGDDFRYQYAESWFKQMDKLIHYVNKDGRVNVLYSTPSIYTNAKNAANQTWPLKTDDYFPYADAPNAYWTGFFTSRPALKRYVRMLSGYYLAARQLEFLAGNKSTKYQTFDLGDALGIAQHHDAVSGTAKQHTTNDYAKRLAIGASKTEAVVSSSLACLTSKKSGDRCSAPASAFAQCQLLNISYCPLTEDSIPQAKSLVVVVYNPLGWNRTDIVRIPVNDANLVVKDSSGNNLEVQYVDVDNVTTNLRKFYVKAYLGLSPTQAPKYWLLFQVSVPPLGWSTYFISKATGKGTRRKNLSRFSSMNETITIGPGNLKMSFSSTTGQLKRMYNSRTGVNIPIQQSYLWYGSSNGDSDSQASGAYIFRPDGSPPRIVSRSVPTTVIHGPIVDEVHQTFSSWIYQVTRLYKGKDHAEIEFTIGPIPTDDGVGKEVITQMTANMATNKEFYTDSNGRDFLKRVRDHREDWPLQVTQPVAGNYYPLNLGVYTKDKISEFSVLVDRATGGSSIKDGEVELMLHRRILQDDSRGVGEALDEEVCVDNNKTCEGLTVRGNYYVSIHKLGAGSRWRRTTGQEIYSPMLLAFTHENVENWKSSHLTEGTTTDPNYSLPPNVALITLEELDGGIVLLRLAHLYEPSEDAEYSTLTKVELKKLFASKTIKELKEVSLSANQEKSEMKKMKWNVEGDKGQEPKAVRGRPVSNSDFVVELAPMEIRTFLLKF*	1011

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr3g0363	1010	Gene3D	Glycoside hydrolase family 38, central domain	324	402	IPR037094	GO:0004559\|GO:0006013
	Apr3g0363	1010	CDD	GH38N_AMII_LAM_like	43	319	-	-
	Apr3g0363	1010	Pfam	Alpha mannosidase middle domain	360	452	IPR015341	GO:0004559\|GO:0006013
	Apr3g0363	1010	PANTHER	ALPHA-MANNOSIDASE	12	1010	-	-
	Apr3g0363	1010	SUPERFAMILY	Galactose mutarotase-like	468	1010	IPR011013	GO:0003824\|GO:0005975\|GO:0030246
	Apr3g0363	1010	Gene3D	Glycoside hydrolase family 38, central domain	403	458	IPR037094	GO:0004559\|GO:0006013
	Apr3g0363	1010	Gene3D	Glycoside hydrolase 38, N terminal domain	43	323	IPR027291	-
	Apr3g0363	1010	Pfam	Glycosyl hydrolases family 38 N-terminal domain	44	355	IPR000602	GO:0004559\|GO:0006013
	Apr3g0363	1010	Gene3D	-	604	868	-	-
	Apr3g0363	1010	Gene3D	-	892	1010	-	-
	Apr3g0363	1010	Pfam	Glycosyl hydrolases family 38 C-terminal beta sandwich domain	902	1007	IPR041147	-
	Apr3g0363	1010	SUPERFAMILY	Glycoside hydrolase/deacetylase	32	358	IPR011330	GO:0005975
	Apr3g0363	1010	Gene3D	-	481	603	IPR013780	-
	Apr3g0363	1010	Pfam	Glycosyl hydrolases family 38 C-terminal domain	604	818	IPR011682	GO:0004559\|GO:0006013
	Apr3g0363	1010	SUPERFAMILY	Families 57/38 glycoside transferase middle domain	360	458	IPR028995	-
	Apr3g0363	1010	PANTHER	ALPHA-MANNOSIDASE	12	1010	-	-
	Apr3g0363	1010	SMART	Alpha_mann_mid_2	360	434	IPR015341	GO:0004559\|GO:0006013

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr3g0363	Apr-Chr3	7231585	7241635	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr3g0363	7	957	Glycoside Hydrolase	AT3G26720	61.675	0.0	1232

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr3g0363	K01191		-	gmx:100775419	1835.85

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Apr3g0363	3	7231585	7241635	Apr3g0363	3	7231585	7241635	ECH
	Apr7g1112	7	18092452	18100362	Apr3g0363	3	7231585	7241635	PCT