Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0246 ATGTGCGCCACCAACGCGGTCCATGTGGCAATGACCCTCGACGTGGCGTATCTCCGCGGCTCCATGGCGGTGATCCTCTCAGTGCTCCAACACTCTTCGTGCCCGGAAAACATAATCTTCCATTTCGTCACCGCAAAGTCGAAACCTTCTTCATCCTTTACACTCAACCGCACATTAACAACCTCATTTCCCTACCTGAATTTCCAAATCTACCCCTTCGACGACGACGCCGTTTTGGGCCTCATCTCAACTTCAATTCGCTCCGCTTTGGATTGCCCTCTCAACTACGCCCGAAGCTACCTCGCCAACCTTCTCCCTCATTGCGTCACCAAAGTCGTTTACCTCGACTCCGACTTGGTCCTCGTCGACGACATTGCCAAGCTCGCCACTACGCCGCTCGCCTCCGACACCGTCCTCGCAGCACCGGAGTACTGCTCCGCCAACTTCTCAGCCTACTTTACGCCGTCGTTTTGGGCCAATCCCTCGCTGTCCCTCACCTTCGCGAATCGTAGGCCATGTTACTTTAACACCGGGGTCATGGTCATTGATCTCCGGCGCTGGCGCGCTGGAGACTATACGACCTTGATACGGGAGTGGATGGAGCTTCAGAAGAGGATGCGGATCTACGAGCTCGGGTCGTTGCCGCCGTTTTTATTAGTTTTTGCGGGGAAAATTGCGCCGGTGGATCACCGATGGAACCAGCACGGGCTCGGCGGCGATAATTTTCGGGGGCTTTGCCGGGATTTGCATCCGGGCCCGGTGAGCCTACTGCATTGGAGTGGAAAAGGGAAGCCGTGGGCCAGGCTCGACGCTAACAGGCCTTGCCCTTTGGATGCGTTATGGGCTCCCTATGATCTGGTGGAGACTCCTTTCGCTCTTGAGGCGTAG 888 0.5642 MCATNAVHVAMTLDVAYLRGSMAVILSVLQHSSCPENIIFHFVTAKSKPSSSFTLNRTLTTSFPYLNFQIYPFDDDAVLGLISTSIRSALDCPLNYARSYLANLLPHCVTKVVYLDSDLVLVDDIAKLATTPLASDTVLAAPEYCSANFSAYFTPSFWANPSLSLTFANRRPCYFNTGVMVIDLRRWRAGDYTTLIREWMELQKRMRIYELGSLPPFLLVFAGKIAPVDHRWNQHGLGGDNFRGLCRDLHPGPVSLLHWSGKGKPWARLDANRPCPLDALWAPYDLVETPFALEA* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0246 295 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 8 275 IPR029044 -
Apr3g0246 295 Pfam Glycosyl transferase family 8 8 268 IPR002495 GO:0016757
Apr3g0246 295 PANTHER HEXOSYLTRANSFERASE 1 295 - -
Apr3g0246 295 SUPERFAMILY Nucleotide-diphospho-sugar transferases 7 286 IPR029044 -
Apr3g0246 295 PANTHER GLYCOSYLTRANSFERASE 8 DOMAIN-CONTAINING PROTEIN 1 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0246 Apr-Chr3 4510306 4511295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0246 1 293 Glycosyltransferase AT3G50760 75.000 3.82e-168 468
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0246 K20893 - gmx:100805007 522.702
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0246 3 4510306 4511295 Apr3g0246 3 4510306 4511295 ECH
Apr3g0246 3 4510306 4511295 Apr7g0984 7 16883189 16884514 ECH
Apr7g0984 7 16883189 16884514 Apr3g0246 3 4510306 4511295 PCT