Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0206 ATGTTGTCTGAATTGGGAAGAAGACCGATGCTTGGGAGTAACGAGGGTTCTTTTGGTGATGAATTGGAGAAGGAGATAGGGATGTTGCTTCGTGAGCAACGTAGACAGGAGGCTGATGATCGTGAGCGTGAGCTCAATATATTTAGGAGTGGATCAGCGCCTCCAACTGTCGAGGGTTCTTTGAGTGCAGTTGGAGGGCTGTTTGGTGGTGGTGGTGGTGGTGGTACTACCGGTGCTGCTGCCGCCGCTTTTCCGGAGTTTACCGGAGCTAAAGATGTGAATGGGATTGCTTCTGAAGAAGAGCTTAGGTCTGATCCTGCTTATCTTTCGTACTATTACTCCAATGTGAATTTGAATCCCAGGCTTCCTCCTCCTTTGCTATCAAAGGAGGATTGGAGGTTTCAACAAAGACTTAAAGGTGGAGCTTCTGTTCTGGGTGGAATTGGAGATAGGAGGAAAGTAAACAGGACTGATGATAATGGTGGTAGATCATTGTTTTCGACCCCGCCTGGTTTTAACATGAGGAAACAAGAGAGTGAGGTGGATAATGAAAAAGCAAGAGGTTCGGCTGACTGGGGTGGCGATGGACTGATTGGTTTGCCTGGACTTGGGCTTAGGAGCAAACAAAAGAGCTTTGCAGAAATTTTCCAGGATGATTTGGGGCGTCATACTTCTGTCACGGGCCTCCCTTCTCGTCCATCCAGTCGTAATGCATTTGATGAAAATGACCTTATGAATTCTGCTGAAGCTGAGTTGGCTCATGTGCGCCGTGAGCCCACAGCCACTGATGCCTTGAGATCAGGATCGCATGTTCAAGGATCATCTGCAGCCCAAAATATTGGCCCACCAGCTTCATATTCATATGCTGCTGCACTGGGATCTTCCTTGTCAAGAAGCACTACTCCTGATCCGCAACTTGTTGCTAGGGCTCCTAGTCCATGCGTCACACCTATTGGTGGTGGGCGAGCCATTGCTACTGAAAAGAGAGGTATTGCCAGTCCAGATGCATTTAATGGTGTTTCATCTGCCATCAATGAGTCAGCAGACATTGTGGCTGCATTGTCGGGGATGAACTTGTCAGCAGATGATGTATTAGATGGTGAAAACCATTTGCCATCACAGGTTGAAGCAGATGTTGATAATCACCAGAGATATCTTTTTGGTAGGCAAGGTGGTCAAGATCATGGTAAGCAACATGCATATTTAAAAAAGTCTGAATCAGCACACTTGCAAAATTCCGGTAAGAGCAGGGGTGGGTCAGACCTCAACAATCCATCCTTGGATAGGCAGGTTGAGCTACAAAAATCTACTGTTCCTTCTAGTAACTCATATTTCAAAGGATCACCTACCTCCCATTTTAGTGGAGGAGGTAGTTTGCCACCTCAGTACCAGCCTTTAGATAGTACAAATTCATCATTTAATAACTATGGTCTGAGTGGGTATGCTGGAAATCCAGCATTGGCATCCTTGATGACTAACCAACTCAGCACTGGTAATTTGCCACCCCTGTTTGAAAATGTTGCTGCAGCATCAGCAATGGCAGCCCCTGGAATGGACTCAAGAATTCTTGGGGGTGGTTTGACTTCTGGAGCTGGTGCTCCGTCTGATGTGCATAATCTTGGTAGGATGGGAAATCAAATTGCAGGCAATGCTCTTCAGGCTCCTTTTGTTGATCCCATGTATCTTCAGTACCTAAGGACATCTGATTATGCCGCAGCGCAACTTGCTGCTCTTAATGATCCCTCTATAGACAGGAATTACTTGGGGAATTCGTACATGAATTTACTTGAGCTTCAGAAAGCTTATCTTGGATCGATCCTATCACCTCAGAAATCTCAATACAATGTACCATTGGCTGGTAAATCAGGCAGCTCCAATCATCATGGTTATTATGCAAATCCTGCATATGGTGTTGGGTTATCTTACCCAGGAAGTCCAATGGCAAACTCTGTTGTATCCACTTCTCCAGTTGGATCTGGAAGTCCTATAAGGCACAATGATCTGAATATGCGTTTTGCATCTGGAATGAGGAATTTAGCTGGGGTCATAGGACCTTGGCATGTAGATACTGGAAACATTGATGAAAGTTCTACTCTGTTGGAAGAGTTTAAAAGCAATAAAACAAAGTGTTTTGAGCTCTCTGAAATTGCCACTCATGTTGTTGAATTCAGTGCCGATCAATATGGGAGCCGATTTATTCAACAAAAGCTTGAAACAGCTACTACAGAAGAAAAAAACATGGTTTATCAGGAAATCATGCCACATGCCCTTGCTTTGATGACTGATGTCTTTGGTAATTATGTGGTTCAAAAGTTTTTTGAGCATGGACTTGCATCCCAGAGAAGAGAATTAGCCAACAAACTTCTTGGCCATGTTTTGACACTTAGCCTTCAAATGTATGGTTGCCGAGTCATCCAGAAGGCCATTGAAGTCGTTGATCTGGATCAGAAGATAGAGATGGTTCAAGAGCTTGATGGTAATGTCATGCGTTGTGTACGAGATCAGAATGGTAATCATGTCATTCAGAAGTGTATTGAATGTGTCCCTGAAGATGCAATCCACTTTATTGTCTCAACATTTTTTGATCAAGTTGTGTCACTCTCAACCCATCCATATGGTTGCCGGGTGATACAGAGAGTACTGGAGCACTGCAAAGACCCTACGACACAGCAGAAAGTTATGGATGAGATTTTAGGAGCAGTTAGCATGTTAGCTCAGGATCAGTATGGAAACTACGTTGTTCAGCATGTACTGGAACATGGGAAGCCTCATGAGCGTTCTTCTATAATAAAGGAATTAGCTGGCAAGATAGTTCAAATGAGTCAACAGAAGTTTGCTTCCAATGTTGTGGAGAAATGTTTGACCTTTGGAGGTCCTTCTGAACGCCAATTATTAGTGAATGAGATGCTTGGCTCCACAGATGAAAATGAGCCTCTTCAGGCGATGATGAAGGACCAATTTGCAAATTATGTTGTTCAAAAGGTGCTGGAAACTTGTGATGACCAACAGCGCGAGCTGATTCTTTCAAGAATAAAGGTTCATTTGAATGCATTGAAAAAGTACACCTACGGAAAGCACATTGTTGCACGTGTAGAAAAACTTGTTGCTGCTGGAGAAAGGAGAATTGCTGCTCAGTCTCCTCAACCTGCTTAG 3153 0.4408 MLSELGRRPMLGSNEGSFGDELEKEIGMLLREQRRQEADDRERELNIFRSGSAPPTVEGSLSAVGGLFGGGGGGGTTGAAAAAFPEFTGAKDVNGIASEEELRSDPAYLSYYYSNVNLNPRLPPPLLSKEDWRFQQRLKGGASVLGGIGDRRKVNRTDDNGGRSLFSTPPGFNMRKQESEVDNEKARGSADWGGDGLIGLPGLGLRSKQKSFAEIFQDDLGRHTSVTGLPSRPSSRNAFDENDLMNSAEAELAHVRREPTATDALRSGSHVQGSSAAQNIGPPASYSYAAALGSSLSRSTTPDPQLVARAPSPCVTPIGGGRAIATEKRGIASPDAFNGVSSAINESADIVAALSGMNLSADDVLDGENHLPSQVEADVDNHQRYLFGRQGGQDHGKQHAYLKKSESAHLQNSGKSRGGSDLNNPSLDRQVELQKSTVPSSNSYFKGSPTSHFSGGGSLPPQYQPLDSTNSSFNNYGLSGYAGNPALASLMTNQLSTGNLPPLFENVAAASAMAAPGMDSRILGGGLTSGAGAPSDVHNLGRMGNQIAGNALQAPFVDPMYLQYLRTSDYAAAQLAALNDPSIDRNYLGNSYMNLLELQKAYLGSILSPQKSQYNVPLAGKSGSSNHHGYYANPAYGVGLSYPGSPMANSVVSTSPVGSGSPIRHNDLNMRFASGMRNLAGVIGPWHVDTGNIDESSTLLEEFKSNKTKCFELSEIATHVVEFSADQYGSRFIQQKLETATTEEKNMVYQEIMPHALALMTDVFGNYVVQKFFEHGLASQRRELANKLLGHVLTLSLQMYGCRVIQKAIEVVDLDQKIEMVQELDGNVMRCVRDQNGNHVIQKCIECVPEDAIHFIVSTFFDQVVSLSTHPYGCRVIQRVLEHCKDPTTQQKVMDEILGAVSMLAQDQYGNYVVQHVLEHGKPHERSSIIKELAGKIVQMSQQKFASNVVEKCLTFGGPSERQLLVNEMLGSTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGERRIAAQSPQPA* 1051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0206 1050 CDD Pumilio 711 1031 IPR033712 GO:0003723
Apr3g0206 1050 Gene3D - 694 1041 IPR011989 -
Apr3g0206 1050 SMART pum_5 859 895 IPR001313 GO:0003723
Apr3g0206 1050 SMART pum_5 715 750 IPR001313 GO:0003723
Apr3g0206 1050 SMART pum_5 751 786 IPR001313 GO:0003723
Apr3g0206 1050 SMART pum_5 896 931 IPR001313 GO:0003723
Apr3g0206 1050 SMART pum_5 974 1009 IPR001313 GO:0003723
Apr3g0206 1050 SMART pum_5 932 967 IPR001313 GO:0003723
Apr3g0206 1050 SMART pum_5 823 858 IPR001313 GO:0003723
Apr3g0206 1050 SMART pum_5 787 822 IPR001313 GO:0003723
Apr3g0206 1050 MobiDBLite consensus disorder prediction 160 174 - -
Apr3g0206 1050 MobiDBLite consensus disorder prediction 223 242 - -
Apr3g0206 1050 ProSiteProfiles Pumilio RNA-binding repeat profile. 751 786 IPR001313 GO:0003723
Apr3g0206 1050 ProSiteProfiles Pumilio RNA-binding repeat profile. 932 967 IPR001313 GO:0003723
Apr3g0206 1050 MobiDBLite consensus disorder prediction 295 321 - -
Apr3g0206 1050 Pfam Nucleic acid binding protein NABP 309 714 IPR012940 -
Apr3g0206 1050 ProSiteProfiles Pumilio RNA-binding repeat profile. 715 750 IPR001313 GO:0003723
Apr3g0206 1050 ProSiteProfiles Pumilio RNA-binding repeat profile. 823 858 IPR001313 GO:0003723
Apr3g0206 1050 ProSiteProfiles Pumilio RNA-binding repeat profile. 896 931 IPR001313 GO:0003723
Apr3g0206 1050 PANTHER PUMILIO HOMOLOG 1-RELATED 36 1043 - -
Apr3g0206 1050 MobiDBLite consensus disorder prediction 227 242 - -
Apr3g0206 1050 ProSiteProfiles Pumilio RNA-binding repeat profile. 787 822 IPR001313 GO:0003723
Apr3g0206 1050 MobiDBLite consensus disorder prediction 387 470 - -
Apr3g0206 1050 ProSiteProfiles Pumilio RNA-binding repeat profile. 968 1009 IPR001313 GO:0003723
Apr3g0206 1050 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 36 1043 - -
Apr3g0206 1050 SUPERFAMILY ARM repeat 698 1032 IPR016024 -
Apr3g0206 1050 Pfam Pumilio-family RNA binding repeat 937 970 IPR001313 GO:0003723
Apr3g0206 1050 Pfam Pumilio-family RNA binding repeat 902 933 IPR001313 GO:0003723
Apr3g0206 1050 Pfam Pumilio-family RNA binding repeat 719 753 IPR001313 GO:0003723
Apr3g0206 1050 Pfam Pumilio-family RNA binding repeat 834 857 IPR001313 GO:0003723
Apr3g0206 1050 Pfam Pumilio-family RNA binding repeat 791 824 IPR001313 GO:0003723
Apr3g0206 1050 Pfam Pumilio-family RNA binding repeat 863 898 IPR001313 GO:0003723
Apr3g0206 1050 Pfam Pumilio-family RNA binding repeat 982 1011 IPR001313 GO:0003723
Apr3g0206 1050 Pfam Pumilio-family RNA binding repeat 755 788 IPR001313 GO:0003723
Apr3g0206 1050 MobiDBLite consensus disorder prediction 405 470 - -
Apr3g0206 1050 MobiDBLite consensus disorder prediction 1 24 - -
Apr3g0206 1050 ProSiteProfiles Pumilio RNA-binding repeat profile. 859 895 IPR001313 GO:0003723
Apr3g0206 1050 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 695 1035 IPR033133 GO:0003723
Apr3g0206 1050 MobiDBLite consensus disorder prediction 145 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0206 Apr-Chr3 3776036 3783193 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0206 K17943 - gmx:100787039 1813.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0206 3 3776036 3783193 Apr3g0206 3 3776036 3783193 ECH
Apr2g2314 2 28068089 28074693 Apr3g0206 3 3776036 3783193 ECH