Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2314 ATGTTGTCTGAATTGGGAAGAAGACCGATGCTTGGTGGTAACGAGGGTTCCTTTGGAGATGAATTGGAAAAGGAGATAGGGATGTTGCTTCGCGAGCAACGAAGACAGGAGGTGGATGATCGTGAACGCGAGCTCAATTTGTATAGGAGTGGATCAGCTCCTCCAACTGTGGAGGGTTCTCTAAGTGCAGTTGGAGGGTTGTTTGGAGGTGGCGGCGGTGGCGGTGCTGCTGCTGCCGCTGCATTTTCGGAGTTTTCCGGGGCGAAAAATGGGAATGGTTTTGCTTCTGAGGAAGAGCTTAGGTCTGATCCGGCTTATCTTTCATACTATTACAACAATGTGAATTTGAATCCTCGGCTTCCGCCTCCTTTGCTCTCGAAGGAGGATTGGAGGTTTACGCAGAGACTAAAAGGTGGAGCTTCAGTTCTTGGTGGAATTGGAGATAGGAGAAAAGTGAACAGGGCTGATGACAATGGTGGCAGATCGATGTATGCGACCCCTCCTGGTTTTAACACGAGGAAACAGGAAAGTGAGGTATATAACGAAAAGTTGGGAGTTTCTGCTGAGTGGGGTGGTGATGGACTAATTGGTTTGCCTGGCCTAGGTCTTGGTAGCAAACAAAAGAGCCTTGCTGAAATTTTTCAGGATGATTTGGGGCGTAATACCTCTATCACTGGCTTTCCTTCTCGTCCTACCAGCCGTAATGCGTTTGATGAAAATGTTGATATTATATCTTCTGCTGAAGCAGAGCTGGGTCATTTGCGTCGTGATTCGTCAGCCTCTGATACCTTAAGATCTGGATCAAATATTCAGGGATCATCTGCAGCCCAAAATACTGGCCCGCAAGCTTCATATACTTATGCTGCTGCACTAGGTTCTTCCTTGTCACGAAGCACTACTCCTGATCCACAACTTGTTGCTAGGGCTCCCAGTCCTTGCCCCACACCTATTGGGGGCGGGAGAGTTGTTGCTGCTGAGAAGAGAGGTGTCAACAGTCCTGATGCATATAATGGTGTTTCATCTGGCATCAATGATTCTGCAGATATTGTGGCTGCATTGTCTGGCATGAATCTATCGGCAGATGATGTTTTAGATGGGGATAGCCATTTCCCGTCACAGGTTGAGTCAGATGTTGATAATCATCAAAGATACCTATTTGGTATGCAAGGTGGTCAGGATCATGGCAAGCAACATGCGTACCTAAAGAAGTCTGAATCAGGACACTTGCAGAAAACAGCTTACTCTGATTCAGGTAAGAGCACTGGGGGTGGGTCAGACATCAACAATCCATCCTTGGATAGACATGCTGAGCTACAGAAGTCTGCTGTTCTTCCCAATAACTCATATTTCAAGGGATCACCTAACTCAGCTTTTAATATTGGAGGTGGATTGCCTGCTCAGTACCAGCCCTTGGATGGTAACAATTCAGCATTTACTAACTATGGCCTGAGTGGGTATGCTGGAAATCCAGCATTGGGATCCTTGATGGCTAGCCAACTTGGAACTGGTAATCTGCCACCTTTATTTGAAAATGTTGCCGCAGCATCAGCAATGGGAACCCCTGGAATGGACTCAAGAATTCTTGGAGGTGGTTTGGCTTCTGGAGTTGCTGCTCCATCTGATTTGCATGGTCATGGTAGAATGGGAAATCAACTTGCGGGTGGTGCTCTCCAAACACCTTTTGTTGATCCCATGTATCTTCAATACATGAGGACATCTGAGTATGCTGCTGCACAACTTGCTGCTCTTAATGATCCTTCTGCAGATAGGAACTATTTAAGCAACTCATACATGAATTTACTTGAGCTTCAGAAAGCTTATCTTGGGAATCTGCTTTCACCTCAGAAATCACAATACAATGCTCCAATGGGTGGTAAATCAGGTGGCTCCAATCATCATGGCTATTATGGAAATCCTGGTTATGGCTTATCTTACCCGGGAAGTCCAATGGCAAACTCTTTATCCACTTCTCCAGTTGGATCTGGAAGTCCTATTAGGCACAATGACCTGAATATGCGTTTTGCATCTGGGGTGAGGAATTTAGTTGGGGTCATGGGGCCATGGCACCTAGATGCTGGGAACATGGATGAAAGCTTTACTTCATCACTGTTGGAAGAGTTTAAAAGCAATAAAACCAAGTGTTTCGAGCTTTCTGAAATTTCTGGTCATGTTGTTGAATTCAGTGCTGATCAATATGGAAGCCGGTTTATTCAACAAAAGCTTGAAACTGCAACTACTGAAGAAAAAAACATGATTTATCAAGAAATCATGCCCCAAGCTCTTGCTTTGATGACTGATGTCTTTGGTAATTATGTGGTTCAAAAGTTTTTTGAGCATGGCCTTGCATCCCAGAGAAGAGAGTTAGCCAACAAGCTTTTTGGCCATGTGCTGACACTTAGCCTTCAAATGTATGGTTGTCGGGTCATTCAGAAGGCCATAGAAGTTGTTGATCTGGACCAGAAGATAAAGATGGTTCAAGAACTTGATGGTAATGTCATGCGCTGTGTACGAGATCAGAATGGTAATCATGTAATTCAGAAATGTATTGAATGCGTCCCTGAAGATGCAATCAACTTTATTGTCTCAACTTTTTTTGATCAAGTTGTGACTTTATCAACCCATCCATATGGTTGCCGGGTGATACAGAGAGTACTGGAGCATTGCAAAGACCCTAATACCCAACAAAAAGTAATGGATGAGATTTTAGGGTCAGTGAGCATGTTAGCCCAGGATCAGTATGGCAACTATGTTGTCCAGCATGTACTTGAACATGGGAAGCCTCACGAGCGTTCAGCTATTATCAAGGAATTAGCAGGCAAGATAGTTCAAATGAGTCAGCAGAAGTTTGCATCAAATGTGGTGGAGAAGTGTTTGACATTTGGAGGTCCTTCTGAACGTCAATTACTTGTGAATGAGATGCTTGGTTCCACTGATGAAAATGAGCCTCTTCAGGCAATGATGAAAGATCAATTTGCAAATTATGTTGTACAAAAGGTGCTGGAGACTTGTGATGACCAACAGCGAGAGCTAATTCTTTCAAGAATTAAAGTTCACTTGAACGCTTTGAAAAAGTACACCTACGGAAAGCATATTGTTGCCCGTGTAGAGAAACTTGTTGCTGCAGGAGAGAGGAGAATTGCTGCTCAGTCTCCTCATCCTGCTTAG 3165 0.4433 MLSELGRRPMLGGNEGSFGDELEKEIGMLLREQRRQEVDDRERELNLYRSGSAPPTVEGSLSAVGGLFGGGGGGGAAAAAAFSEFSGAKNGNGFASEEELRSDPAYLSYYYNNVNLNPRLPPPLLSKEDWRFTQRLKGGASVLGGIGDRRKVNRADDNGGRSMYATPPGFNTRKQESEVYNEKLGVSAEWGGDGLIGLPGLGLGSKQKSLAEIFQDDLGRNTSITGFPSRPTSRNAFDENVDIISSAEAELGHLRRDSSASDTLRSGSNIQGSSAAQNTGPQASYTYAAALGSSLSRSTTPDPQLVARAPSPCPTPIGGGRVVAAEKRGVNSPDAYNGVSSGINDSADIVAALSGMNLSADDVLDGDSHFPSQVESDVDNHQRYLFGMQGGQDHGKQHAYLKKSESGHLQKTAYSDSGKSTGGGSDINNPSLDRHAELQKSAVLPNNSYFKGSPNSAFNIGGGLPAQYQPLDGNNSAFTNYGLSGYAGNPALGSLMASQLGTGNLPPLFENVAAASAMGTPGMDSRILGGGLASGVAAPSDLHGHGRMGNQLAGGALQTPFVDPMYLQYMRTSEYAAAQLAALNDPSADRNYLSNSYMNLLELQKAYLGNLLSPQKSQYNAPMGGKSGGSNHHGYYGNPGYGLSYPGSPMANSLSTSPVGSGSPIRHNDLNMRFASGVRNLVGVMGPWHLDAGNMDESFTSSLLEEFKSNKTKCFELSEISGHVVEFSADQYGSRFIQQKLETATTEEKNMIYQEIMPQALALMTDVFGNYVVQKFFEHGLASQRRELANKLFGHVLTLSLQMYGCRVIQKAIEVVDLDQKIKMVQELDGNVMRCVRDQNGNHVIQKCIECVPEDAINFIVSTFFDQVVTLSTHPYGCRVIQRVLEHCKDPNTQQKVMDEILGSVSMLAQDQYGNYVVQHVLEHGKPHERSAIIKELAGKIVQMSQQKFASNVVEKCLTFGGPSERQLLVNEMLGSTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGERRIAAQSPHPA* 1055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2314 1054 MobiDBLite consensus disorder prediction 294 313 - -
Apr2g2314 1054 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 699 1039 IPR033133 GO:0003723
Apr2g2314 1054 Pfam Nucleic acid binding protein NABP 308 718 IPR012940 -
Apr2g2314 1054 ProSiteProfiles Pumilio RNA-binding repeat profile. 755 790 IPR001313 GO:0003723
Apr2g2314 1054 SMART pum_5 755 790 IPR001313 GO:0003723
Apr2g2314 1054 SMART pum_5 978 1013 IPR001313 GO:0003723
Apr2g2314 1054 SMART pum_5 827 862 IPR001313 GO:0003723
Apr2g2314 1054 SMART pum_5 791 826 IPR001313 GO:0003723
Apr2g2314 1054 SMART pum_5 936 971 IPR001313 GO:0003723
Apr2g2314 1054 SMART pum_5 900 935 IPR001313 GO:0003723
Apr2g2314 1054 SMART pum_5 719 754 IPR001313 GO:0003723
Apr2g2314 1054 SMART pum_5 863 899 IPR001313 GO:0003723
Apr2g2314 1054 CDD Pumilio 715 1035 IPR033712 GO:0003723
Apr2g2314 1054 ProSiteProfiles Pumilio RNA-binding repeat profile. 863 899 IPR001313 GO:0003723
Apr2g2314 1054 MobiDBLite consensus disorder prediction 150 175 - -
Apr2g2314 1054 ProSiteProfiles Pumilio RNA-binding repeat profile. 719 754 IPR001313 GO:0003723
Apr2g2314 1054 ProSiteProfiles Pumilio RNA-binding repeat profile. 827 862 IPR001313 GO:0003723
Apr2g2314 1054 Pfam Pumilio-family RNA binding repeat 867 902 IPR001313 GO:0003723
Apr2g2314 1054 Pfam Pumilio-family RNA binding repeat 941 974 IPR001313 GO:0003723
Apr2g2314 1054 Pfam Pumilio-family RNA binding repeat 795 828 IPR001313 GO:0003723
Apr2g2314 1054 Pfam Pumilio-family RNA binding repeat 986 1015 IPR001313 GO:0003723
Apr2g2314 1054 Pfam Pumilio-family RNA binding repeat 723 757 IPR001313 GO:0003723
Apr2g2314 1054 Pfam Pumilio-family RNA binding repeat 838 861 IPR001313 GO:0003723
Apr2g2314 1054 Pfam Pumilio-family RNA binding repeat 760 791 IPR001313 GO:0003723
Apr2g2314 1054 Pfam Pumilio-family RNA binding repeat 905 937 IPR001313 GO:0003723
Apr2g2314 1054 Gene3D - 699 1045 IPR011989 -
Apr2g2314 1054 ProSiteProfiles Pumilio RNA-binding repeat profile. 972 1013 IPR001313 GO:0003723
Apr2g2314 1054 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 36 1047 - -
Apr2g2314 1054 MobiDBLite consensus disorder prediction 404 432 - -
Apr2g2314 1054 PANTHER PUMILIO HOMOLOG 1-RELATED 36 1047 - -
Apr2g2314 1054 SUPERFAMILY ARM repeat 701 1036 IPR016024 -
Apr2g2314 1054 MobiDBLite consensus disorder prediction 253 280 - -
Apr2g2314 1054 MobiDBLite consensus disorder prediction 408 432 - -
Apr2g2314 1054 ProSiteProfiles Pumilio RNA-binding repeat profile. 791 826 IPR001313 GO:0003723
Apr2g2314 1054 ProSiteProfiles Pumilio RNA-binding repeat profile. 936 971 IPR001313 GO:0003723
Apr2g2314 1054 ProSiteProfiles Pumilio RNA-binding repeat profile. 900 935 IPR001313 GO:0003723
Apr2g2314 1054 MobiDBLite consensus disorder prediction 261 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2314 Apr-Chr2 28068089 28074693 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2314 K17943 - gmx:100818836 1837.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2314 2 28068089 28074693 Apr2g2314 2 28068089 28074693 ECH
Apr2g2314 2 28068089 28074693 Apr3g0206 3 3776036 3783193 ECH