Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2477 ATGGAAAGCAACATACCAGTACTAGCGAAGAAAGTGTGGAACATGGTACGCGTGGTTTTCTTCATGTTGAGAAAAGGAATATCAAAGGGGAAACTAATGATGGACCTAAACATGATGCTCAAACGCCGCGGAAAGATTGCCGGAAAAGCCATTGCCAACCTAATGTTCCACCACCACCACCACGGCGGCTCCACCTCAAGCCGCCGCTCGCACGACTCACACTTACAATTCTCCGCTCCAAGGGAGTACGAGTTCAGCTGCAGCAACACTCCCAACAACTTCTTCCCCATAGGGAAACGCCACCGTCACGGCCACAACCACGGTCACTTCTTCACGTGTGCCCACGCGCCTCCCACGCGTGACGACGAGGTGGTGACGGTGAACGCAGTGAAAGCGGTGCTTGAGATGCTGAACAATGAGGTTACCGTAGAAGCGTCCCCTGCACTGCCAGGGTTTGGGCGTAGCCCTATGGTGAGGCAATTAAGGGTCACGGATTCGCCGTTTCCTCTGCGTGACACGGAGGATGAGAAAGACAACCAGGTTGACAAGGCGGCGGAAGAGTTTATAAAGAGATTTTACAAGGATTTGAGGAAGCAGAATTAA 603 0.524 MESNIPVLAKKVWNMVRVVFFMLRKGISKGKLMMDLNMMLKRRGKIAGKAIANLMFHHHHHGGSTSSRRSHDSHLQFSAPREYEFSCSNTPNNFFPIGKRHRHGHNHGHFFTCAHAPPTRDDEVVTVNAVKAVLEMLNNEVTVEASPALPGFGRSPMVRQLRVTDSPFPLRDTEDEKDNQVDKAAEEFIKRFYKDLRKQN* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2477 200 Pfam Cotton fibre expressed protein 178 199 IPR008480 -
Apr2g2477 200 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN 1 199 - -
Apr2g2477 200 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN-RELATED 1 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2477 Apr-Chr2 29197483 29198085 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2477 - - gmx:100802625 292.737
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1385 2 19961992 19962814 Apr2g2477 2 29197483 29198085 ECH
Apr2g2477 2 29197483 29198085 Apr2g2477 2 29197483 29198085 ECH
Apr2g2477 2 29197483 29198085 Apr5g1087 5 15514462 15514980 ECH
Apr2g2477 2 29197483 29198085 Apr2g2477 2 29197483 29198085 PCT