Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2410 ATGTTTTCAGGGGTGACGGGAATCATGAATAGAGAACATAAAATCAAAGGGACCGTTGTGTTAATGCGAAAGAATGTGTTGGACTTCAACACCGTCGCTAATATTACCAGTGGAAATGTTGGGGGACTCATAGGAACCGGTCTCAACGTTGTTGGTTCCACAGTTGACAACCTAACTTCTTTTTTGGGCCGTAGCGTCTCACTCCAACTCATTAGTGCTACCAAGGCTGATGCAAATGGAAAAGGAAAAGTTGGAAGGGATACGTTCTTGGAAGGTATTATTTTCTCGTTACCAACTTTGGGAGCAGGAGAGTCTGCATTCAATATTCATTTTGAATGGGACGATAGCATGGGAATTCCCGGTGCATTTTACATAAAGAACTACATGCAAGTTGAGTTTTACCTCAAAAGTTTGACTCTTGAAGACGTTCCAAACCATGGAACTATCCGCTTTGTTTGCAACTCATGGGTTTACAACTCAAAACTTTACAAAAGCGAACGCATTTTCTTTGCCAACAATACGTATCTTCCAAGTGAGACACCACCTCCACTTGTCAAGTACAGAGAAGAAGAATTGAAGATTTTAAGAGGAGATGGAACAGGAGAGCGCAAGGAGCATGATAGGATTTATGATTATGATGTGTACAATGATTTGGGCAATCCAGATCACGGTGAAAAGTTTACTCGCCCAGTTCTTGGAGGATCTACCCATCCCTACCCTCGTAGGGGAAGAACTGGTCGATACCCATCAAGGAAAGATCCCAAGTGTGAGAAACCAGGCGAAGTTTATGTTCCAAGAGATGAAAATTTTGGTCACTTAAAGTCCTCAGACTTTCTTACATATGGAATAAAATCTTTATCTCAATACGTGTTGCCAGCGTTTCAATCTGCTTTCGATTTGAATTTCACGCGACCAGAGTTTGATAGCTTCCAAGAGGTGCGTGACCTCTATGAAGGTGGAATTAAGCTACCTACCGACGTAATTAGCACAATTAGCCCCTTACCAGTTATCAAAGAACTCTTCCGTACCGATGGGGAACAGGTCCTCAAGTTTCCACCACCTCACGTTATTCAAGTGAGTAAATCTGCATGGATGACTGATGAAGAATTTGCAAGGGAAATGCTTGCTGGTGTAAATCCTTGCGTAATTCGTGGTCTTCAAGAATTTCCTCCAACAAGCAATCTAGATCCCACAATCTATGGTGATCAAACCAGCAAGATAACAGCAGATGTCCTTAACCTAGACGGGTACACAGTGGACGAGGCACTTGCTAGCCGGAGGTTATTTATATTAGATTACCATGATATATTCATGCCATATCTGAGGCAGATAAATCAGACTTATGCCAAGGCTTATGCTACAAGGACCATCCTCTTTTTGAAAGAAAATGGGTCATTAAAGCCAGTGGCCATAGAATTAAGTTTGCCACATCCTGGTGGGGATCAATCAGGTGCCATTAGTCAAGTTATCTTACCTGCAAATGAAGGTGTTGAAAGTACAATTTGGCTACTAGCCAAAGCTTATGTGGTTGTAAATGACTCTTGCTATCATCAACTCATGAGTCATTGGTTAAATACTCATGCAGTGATGGAGCCATTCATCATAGCAACAAACCGACAGCTTAGTGTGCTTCACCCAATTTATAAACTTCTATCTCCTCACTATCGTGACACCATGAACATCAATGCACTTGCTAGGCAATCTCTGATTAATGCTGATGGCATAATAGAGAGATCTTTTTTGCCTTCAAAGTATGCTGTTGAGATGTCTTCAGCGGTTTATAAGAATTGGGTTTTTCCTGATCAAGCACTACCTGCTGATCTTATCAAGAGAGGAGTGGCAGTTAAGGATTCATCTTCCCCACATGGACTTCGTCTTCTGATAGAGGATTACCCTTATGCTGTTGATGGATTAGAGATATGGGGTGTTATTAACACATGGGCCCAAGAGTATGTCTCGTTGTACTATTCAACAAACGATGATGTCAGAGCTGATTCTGAGCTCCAACATTGGTGGAAAGAAGCTGTAGAAATAGGTCATGGGGATTTGAAAGAAAAGCCATGGTGGCCTAAGTTGCAAACACTTGAAGAGCTTGTTGAAATTTGCACTATTATCATATGGACTGCTTCAGCCCTTCATGCAGCTGTTAATTTTGGACAATATCCTTATGGAGGTTATATCCTTAATAGGCCAACTCTTAGTAGGAGATTCATGCCAGAGCAAGGGTCTGCTGAGTATGCTGCCTTGGCTAAGAACCTTGAGAAGGAGTTTTTGAAAACTATTACTGGCAAGCAAGAGACCCTTATTGACCTCACTGTTATTGAAATCTTGTCAAGGCATGCTTCTGATGAGTTATACCTTGGTCAGAGAGATGGTGGTGACAATTGGACTTTTGATGCTGGCCCATTAGAGGCCTTTAAGAAGTTTGGAAAGAATCTTGCAGATATTGAGCAAAAACTCCAACAGAAGAACAATGACGCTTCATTGAGAAACCGCTATGGGCCAGCTAAGATGCCTTACACTTTGCTTTACCCTTCTAGTGAGGAAGGGTTGACTTTCAGAGGAATTCCCAACAGTATCTCTATTTGA 2589 0.4179 MFSGVTGIMNREHKIKGTVVLMRKNVLDFNTVANITSGNVGGLIGTGLNVVGSTVDNLTSFLGRSVSLQLISATKADANGKGKVGRDTFLEGIIFSLPTLGAGESAFNIHFEWDDSMGIPGAFYIKNYMQVEFYLKSLTLEDVPNHGTIRFVCNSWVYNSKLYKSERIFFANNTYLPSETPPPLVKYREEELKILRGDGTGERKEHDRIYDYDVYNDLGNPDHGEKFTRPVLGGSTHPYPRRGRTGRYPSRKDPKCEKPGEVYVPRDENFGHLKSSDFLTYGIKSLSQYVLPAFQSAFDLNFTRPEFDSFQEVRDLYEGGIKLPTDVISTISPLPVIKELFRTDGEQVLKFPPPHVIQVSKSAWMTDEEFAREMLAGVNPCVIRGLQEFPPTSNLDPTIYGDQTSKITADVLNLDGYTVDEALASRRLFILDYHDIFMPYLRQINQTYAKAYATRTILFLKENGSLKPVAIELSLPHPGGDQSGAISQVILPANEGVESTIWLLAKAYVVVNDSCYHQLMSHWLNTHAVMEPFIIATNRQLSVLHPIYKLLSPHYRDTMNINALARQSLINADGIIERSFLPSKYAVEMSSAVYKNWVFPDQALPADLIKRGVAVKDSSSPHGLRLLIEDYPYAVDGLEIWGVINTWAQEYVSLYYSTNDDVRADSELQHWWKEAVEIGHGDLKEKPWWPKLQTLEELVEICTIIIWTASALHAAVNFGQYPYGGYILNRPTLSRRFMPEQGSAEYAALAKNLEKEFLKTITGKQETLIDLTVIEILSRHASDELYLGQRDGGDNWTFDAGPLEAFKKFGKNLADIEQKLQQKNNDASLRNRYGPAKMPYTLLYPSSEEGLTFRGIPNSISI* 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2410 862 PRINTS Plant lipoxygenase signature 141 159 IPR001246 GO:0016491
Apr2g2410 862 PRINTS Plant lipoxygenase signature 167 188 IPR001246 GO:0016491
Apr2g2410 862 PRINTS Plant lipoxygenase signature 206 222 IPR001246 GO:0016491
Apr2g2410 862 PRINTS Plant lipoxygenase signature 238 257 IPR001246 GO:0016491
Apr2g2410 862 PRINTS Plant lipoxygenase signature 304 325 IPR001246 GO:0016491
Apr2g2410 862 PRINTS Plant lipoxygenase signature 349 365 IPR001246 GO:0016491
Apr2g2410 862 PRINTS Plant lipoxygenase signature 388 407 IPR001246 GO:0016491
Apr2g2410 862 PRINTS Plant lipoxygenase signature 452 476 IPR001246 GO:0016491
Apr2g2410 862 PRINTS Plant lipoxygenase signature 774 788 IPR001246 GO:0016491
Apr2g2410 862 ProSiteProfiles PLAT domain profile. 46 171 IPR001024 GO:0005515
Apr2g2410 862 Gene3D PLAT/LH2 domain 4 175 - -
Apr2g2410 862 Pfam PLAT/LH2 domain 73 170 IPR001024 GO:0005515
Apr2g2410 862 Gene3D - 274 362 IPR027433 -
Apr2g2410 862 MobiDBLite consensus disorder prediction 246 262 - -
Apr2g2410 862 Gene3D - 176 273 - -
Apr2g2410 862 ProSitePatterns Lipoxygenases iron-binding region signature 1. 517 531 IPR020833 GO:0016702|GO:0046872
Apr2g2410 862 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 174 862 IPR013819 GO:0016702|GO:0046872
Apr2g2410 862 Gene3D - 363 494 - -
Apr2g2410 862 PANTHER LIPOXYGENASE 1 862 IPR000907 GO:0016702|GO:0046872
Apr2g2410 862 SUPERFAMILY Lipoxigenase 176 862 IPR036226 -
Apr2g2410 862 MobiDBLite consensus disorder prediction 225 262 - -
Apr2g2410 862 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 13 175 IPR036392 GO:0005515
Apr2g2410 862 SMART LH2_4 13 172 IPR001024 GO:0005515
Apr2g2410 862 Coils Coil 806 826 - -
Apr2g2410 862 CDD PLAT_LH2 13 172 IPR042057 -
Apr2g2410 862 PANTHER SEED LINOLEATE 13S-LIPOXYGENASE-1 1 862 - -
Apr2g2410 862 Gene3D - 495 861 - -
Apr2g2410 862 Pfam Lipoxygenase 184 845 IPR013819 GO:0016702|GO:0046872
Apr2g2410 862 ProSitePatterns Lipoxygenases iron-binding region signature 2. 544 554 IPR020834 GO:0016702|GO:0046872
Apr2g2410 862 PRINTS Lipoxygenase signature 499 516 IPR013819 GO:0016702|GO:0046872
Apr2g2410 862 PRINTS Lipoxygenase signature 517 534 IPR013819 GO:0016702|GO:0046872
Apr2g2410 862 PRINTS Lipoxygenase signature 537 557 IPR013819 GO:0016702|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2410 Apr-Chr2 28714678 28723104 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2410 14 862 Acyl Lipid Metabolism Gene Families AT1G55020 57.688 0.0 1005
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2410 K15718 - gmx:547774 1485.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1032 10 22719090 22720542 Apr2g2410 2 28714678 28723104 PCT