Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2015 ATGGGTTCAGCGAACAAAGAACCATTGTTAGCGACAAGGGAGAGGGAGACACAGCCACCTAAATCAAAGCACGATTCAGACGGCGAATTGGAGAGAATTCTCTCTGACACAACCCAACCTTTCATTAGCCGTCTGGGACCCGCCACGTGGATCGAGTTGAAGCTCCTCTTCTTCCTCGCTGCACCCGCTGTCCTCGTTTACCTCATCAACTACGTCATGTCCATGTCCACCCAAATCTTCTCCGGCCATCTCGGTAACCTCGAACTCGCTGCCGCTTCCCTTGGCAACACCGGCATCCAAATCTTCGCCTATGGCCTCATGTTGGGTATGGGGAGTGCGGTTGAGACGCTATGTGGACAAGCCTTTGGTGCTCAAAAGTTCGAGATGCTAGGCGTGTACTTGCAACGATCAACGATTCTTCTTTCATTAGCGGGTGTTGTTTTGACTATTGTATATGTCTTCAGCGAACCGATTCTAGTATTTCTGGGGGAATCGCCAAGAATTGCTTCTGCTGCAGCACTTTTTGTGTATGGTCTAATCCCTCAAATCTTTGCATATGCTGTGAATTTTCCGATTCAGAAGTTCCTTCAAGCGCAAAGCATAGTGACTCCCAGTGCGTACATATCAGCAGCAACGTTGGTGGTTCATCTTGTGTTGAGCTGGGTGGCTGTGTATGAGATCGGGTTGGGTCTGTTGGGTGCGTCTTTGGTGTTGAGTTTGTCATGGTGGATCATTGTGATTGCGCAGTTTGTGTTCATTGTGAAGAGTGAGAGGTGTAAGCGCACGTGGCAAGGGTTCACATTGCAAGCTTTTTCGGGGTTACCTGAGTTCTTTAAGTTGTCGGCGGCTTCTGCTGTTATGTTGTGTCTTGAGACTTGGTACTTTCAGATTCTCGTCTTGCTTGCTGGCTTGCTTCCTCAACCCGAGTTGGCTCTTGATTCTCTTTCTATTTGTACCACAGTCGCTGGATGGGTGTTCATGATCTCTGTCGGATTCAACGCAGCTGCAAGCGTGAGAGTGAGCAACGAACTAGGAGCAAGAAATCCAAAATCAGCCTCATTTTCGGTGGTGGTGGTGACATTGATTTCTTTCATAATATCAGTCATAGCAGCATTGGTGGTGCTTGCATTACGTGATGTTATTAGCTATGCCTTCACAGAGGGGGAAGAGGTTGCTGCTGCAGTCTCTGATCTTTGCCCACTGCTTGCTCTTTCTCTTGTCCTCAATGGCATTCAGCCTGTCTTATCTGGGGTGGCTGTTGGATGTGGATGGCAAGCTTTCGTTGCATATGTAAACGTGGGTTGTTATTATGGAGTTGGCATACCATTGGGTTCAGTTCTCGGCTTTTATTTCAAATTTGGTGCTAAGGGAATATGGCTTGGAATGCTAGGTGGCACAACCATGCAAACAATTATTCTAATCTGGGTCACATTTAGAACAGATTGGAATAAGGAGGTTGAGGAAGCTGCCAAGAGGTTGAACAAATGGGAAAACAAGAATGAGGAGCCACTTCTAAACTGA 1521 0.4734 MGSANKEPLLATRERETQPPKSKHDSDGELERILSDTTQPFISRLGPATWIELKLLFFLAAPAVLVYLINYVMSMSTQIFSGHLGNLELAAASLGNTGIQIFAYGLMLGMGSAVETLCGQAFGAQKFEMLGVYLQRSTILLSLAGVVLTIVYVFSEPILVFLGESPRIASAAALFVYGLIPQIFAYAVNFPIQKFLQAQSIVTPSAYISAATLVVHLVLSWVAVYEIGLGLLGASLVLSLSWWIIVIAQFVFIVKSERCKRTWQGFTLQAFSGLPEFFKLSAASAVMLCLETWYFQILVLLAGLLPQPELALDSLSICTTVAGWVFMISVGFNAAASVRVSNELGARNPKSASFSVVVVTLISFIISVIAALVVLALRDVISYAFTEGEEVAAAVSDLCPLLALSLVLNGIQPVLSGVAVGCGWQAFVAYVNVGCYYGVGIPLGSVLGFYFKFGAKGIWLGMLGGTTMQTIILIWVTFRTDWNKEVEEAAKRLNKWENKNEEPLLN* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2015 506 PANTHER PROTEIN DETOXIFICATION 14 493 - -
Apr2g2015 506 Pfam MatE 284 444 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Apr2g2015 506 Pfam MatE 62 222 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Apr2g2015 506 MobiDBLite consensus disorder prediction 1 30 - -
Apr2g2015 506 PANTHER MULTIDRUG RESISTANCE PROTEIN 14 493 - -
Apr2g2015 506 TIGRFAM matE: MATE efflux family protein 62 459 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Apr2g2015 506 MobiDBLite consensus disorder prediction 9 30 - -
Apr2g2015 506 CDD MATE_eukaryotic 52 488 IPR045069 GO:0042910|GO:1990961
Apr2g2015 506 Coils Coil 479 499 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2015 Apr-Chr2 25485425 25489835 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2015 K03327 - gmx:100795338 856.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2015 2 25485425 25489835 Apr2g2015 2 25485425 25489835 ECH
Apr2g2015 2 25485425 25489835 Apr3g1153 3 26082746 26088861 PCT