Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1944 ATGACTAACTTCGACACAAATCCCTTCGCCAAAGAAGAGGTTAATCCCTTCGCCGATGGATCTGTTAGAGGGAAAGCATTAGAGCAATCAAATTATGGTGGCGGTGCATTCTATACTACCAACCCAGGAAGTGTTTCCTCAAAGCTGTCACCCCTGCCTCCTGAGCCTTATGATCGAGGGGCAACTGTTGACATTCCTCTTGATACCCCAAAGGATTTCAAAGCAAAGGAGAAGGAGCTTCAAGCTAGAGAGGCTGAATTAAAAAGAAGGGAACAGGAGCTAAAACGAAGGGAAGATGCTATAGCACGAGCTGGAATCGTCATAGAGGAAAAAAATTGGCCACCTTTTTTCCCCATCATTCATCATGACATTGCAAATGAAATACCTATACATCTTCGAACGATCCAATATGTTGCATTTACAACATGGTTGGGTTTGATTTTATGTCTTTTATGGAACATAGTGGCAGTTACTGTCGCTTGGCTCAAAGGAGAAGGTCTGTCAATCTGGTTTCTTTCTATCATATACTTTATTTCCGGTGTTCCAGGAGCCTATGTGATGTGGTATCGCCCTCTTTATCGTGCTACAAGGACGGATAGTGCTCTAAAGTTTGGCTGGTTTTTCTTGAGTTACTCGGTGCACGTTCTCTTTTGCGTTTATGCTGCAATTGCTCCTCCACTTATCTTCAAAGGAAAATCTCTCGCAGGTTTTCTGCCTGCGTTTGAGATATTGGACGACAATGCAATAGTTGGGATATTGTACTTTATTGGGTTTGGATTTTTCTGCGTGGAGTCACTGCTGAGCATCTGGGTTATTCAGCAAGTATACATGTACTTCCGCGGCAGTGGGAAGGCTGCGGAGATGAAGCGTCAGGCCACGAGAAGGGCCATGATGGCAGCTCTATGA 906 0.4437 MTNFDTNPFAKEEVNPFADGSVRGKALEQSNYGGGAFYTTNPGSVSSKLSPLPPEPYDRGATVDIPLDTPKDFKAKEKELQAREAELKRREQELKRREDAIARAGIVIEEKNWPPFFPIIHHDIANEIPIHLRTIQYVAFTTWLGLILCLLWNIVAVTVAWLKGEGLSIWFLSIIYFISGVPGAYVMWYRPLYRATRTDSALKFGWFFLSYSVHVLFCVYAAIAPPLIFKGKSLAGFLPAFEILDDNAIVGILYFIGFGFFCVESLLSIWVIQQVYMYFRGSGKAAEMKRQATRRAMMAAL* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1944 301 PANTHER SECRETORY CARRIER-ASSOCIATED MEMBRANE PROTEIN SCAMP 1 301 IPR007273 GO:0015031|GO:0016021
Apr2g1944 301 MobiDBLite consensus disorder prediction 33 48 - -
Apr2g1944 301 Pfam SCAMP family 110 281 IPR007273 GO:0015031|GO:0016021
Apr2g1944 301 Coils Coil 73 100 - -
Apr2g1944 301 MobiDBLite consensus disorder prediction 1 53 - -
Apr2g1944 301 PANTHER SECRETORY CARRIER-ASSOCIATED MEMBRANE PROTEIN 1 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1944 Apr-Chr2 24887826 24893149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1944 63 301 Miscellaneous Gene Families AT2G20840 80.335 1.68e-138 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1944 K19995 - jre:109022292 491.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1944 2 24887826 24893149 Apr2g1944 2 24887826 24893149 ECH
Apr2g1944 2 24887826 24893149 Apr3g1083 3 25470102 25476797 PCT